Job Description P80645 Confidence 100.00% Date Thu Jan 5 12:33:15 GMT 2012 Rank 4 Aligned Residues 372 % Identity 23% Template c3b9nB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.						.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																					.	.
Predicted Secondary structure														.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	N	M	F	W	F	L	P	T	H	G	.	.	.	.	.	D	G	H	Y	L	G	T	E	E	G	S	R	P	V	D	H	G	Y	L	Q	Q	I	A	Q	A	A	D	R	L	G	Y	T	G	V	L	I	P	T	G	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	E
Query Conservation														.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	H	I	N	A	F	E	M	N	C	V	G	H	I	A	H	G	L	W	R	H	P	E	N	Q	R	H	R	Y	T	D	L	N	Y	W	T	E	L	A	Q	L	L	E	K	G	K	F	D	A	L	F	L	A	D	V	V	G	I	Y	D	V	Y	R	Q	S	R	D	T	A	V	R	E	A	V	Q	I	P	V	N
Template Known Secondary structure											S	B	S	B	S	S	S	T	T	G	G	G	S	T	T			G	G	G	T	T															T	T		S								S	S					G	G	G	S	S						T	T	B	S		S	B
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		D	A	W	L	V	A	A	S	M	I	P	V	T	Q	R	L	K	F	L	V	A	L	R	P	S	V	T	S	P	T	V	A	A	R	Q	A	A	T	L	D	R	L	S	N	G	R	A	L	F	N	L	V	T	G	S	D	P	Q	E	L	A	G	D	G	.	.	V	F	L	D	H	S	E	R	Y	E	A	S	A	E
Query Conservation																																																																		.	.
Alig confidence																																																																		.	.
Template Conservation
Template Sequence		D	P	L	M	L	I	S	A	M	A	Y	V	T	K	H	L	A	F	A	V	T	F	S	T	T	Y	E	H	P	Y	G	H	A	R	R	M	S	T	L	D	H	L	T	K	G	R	I	A	W	N	V	V	T	S	H	L	P	S	A	D	K	N	F	G	I	K	K	I	L	E	H	D	E	R	Y	D	L	A	D	E
Template Known Secondary structure			S	G	G	G									S	S									S	S	S	S																T	T	S																		T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		135	.	.	.	.	140	.	.	.	.	.																							.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	T	Q	V	W	R	R	L	L	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	V	D	F	N	G	K	H	I	H	V	R	G	A	K	L	L	F	P	A	I	Q	Q	P	Y	P	P	L	Y	F	G	G	S	S	D	V	A	Q	E	L	A	A	E	Q	V	D
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																											.
Template Sequence		Y	L	E	V	C	Y	K	L	W	E	G	S	W	E	D	N	A	V	I	R	D	I	E	N	N	I	Y	T	D	P	S	K	V	H	E	I	N	H	S	G	K	Y	F	E	V	P	G	P	H	L	C	E	P	S	P	Q	R	.	T	P	V	I	Y	Q	A	G	M	S	E	R	G	R	E	F	A	A	K	H	A	E
Template Known Secondary structure												T	S	B		T	T						T	T	T	T					G	G	G	B								S	S								S	S				T	T	S	.	S									S												S
Template Predicted Secondary structure																																																											.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		L	Y	L	T	W	G	E	P	P	E	L	V	K	E	K	I	E	Q	V	R	A	K	A	A	A	H	G	R	K	I	.	.	.	R	F	G	I	R	L	H	V	I	V	R	E	T	N	D	E	A	W	Q	A	A	E	R	L	I	S	H	L	D	D	E	T	I	A	K	A	Q	A	A	F	A	R	T	D	S	V	G
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence		C	V	F	L	G	G	K	D	V	E	T	L	K	F	F	V	D	D	I	R	K	R	A	K	K	Y	G	R	N	P	D	H	I	K	M	F	A	G	I	C	V	I	V	G	K	T	H	D	E	A	M	E	K	L	N	S	F	Q	K	Y	W	S	L	E	G	H	L	A	H	Y	G	G	G	T	G	Y	D	L	S	K
Template Known Secondary structure							B	S	S															T	G	G	G	T			G	G	G													S	S													T	T																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		Q	Q	R	M	A	A	L	H	N	G	K	R	D	N	L	E	I	S	P	N	L	W	A	G	V	G	L	V	R	G	G	A	G	T	A	L	V	G	D	G	P	T	V	A	A	R	I	N	E	Y	A	A	L	.	G	I	D	S	F	V	L	S	G	Y	P	H	L	E	E	A	Y	R	V	G	E	L	L	F	P	L
Query Conservation																																																							.
Alig confidence																	.	.	.	.	.	.																																	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		Y	S	S	N	D	Y	I	G	S	I	S	V	G	E	I	.	.	.	.	.	.	I	N	N	M	S	K	L	D	G	K	W	F	K	L	S	V	G	T	P	K	K	V	A	D	E	M	Q	Y	L	V	E	E	A	G	I	D	G	F	N	L	V	Q	Y	V	S	P	G	T	F	V	D	F	I	E	L	V	V	P	E
Template Known Secondary structure		S		T	T		B	S	S	S	S	B					.	.	.	.	.	.					T	S	G	G	G	S	S	B						S																									S	S	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.							.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		349	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		L	D	V	A	.	.	.	I	P	E	I	P	Q	P	Q	P	L	N	P	Q	G	E	A	V	A	N	D	F	I	P	R	K	V	A	Q
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		L	Q	K	R	G	L	Y	R	V	D	Y	E	E	G	T	Y	R	E	K	L	F	G	K	G	N	Y	R	L	P	D	D	H	I	A	A
Template Known Secondary structure					T	T		S		S	S			S	S									T	T			S			T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.