Job Description P80645 Confidence 100.00% Date Thu Jan 5 12:33:15 GMT 2012 Rank 6 Aligned Residues 346 % Identity 23% Template c1tvlA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.												.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	N	M	F	W	F	L	P	T	.	.	.	H	G	D	G	H	Y	L	G	T	E	E	G	S	R	P	V	D	H	G	Y	L	Q	Q	I	A	Q	A	A	D	R	L	G	Y	T	G	V	L	I	P	T	G	R	S	C	E	D	.	.	.	.	.	.	.	.	.	.	.	A	W	L	V	A	A	S	M	I	P
Query Conservation												.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	Q	F	G	A	M	I	H	G	V	G	G	T	T	D	G	W	R	H	P	D	V	D	P	S	A	S	T	N	I	E	F	Y	M	K	K	A	Q	T	A	E	K	G	L	F	S	F	I	F	I	A	D	G	L	F	I	S	E	K	S	I	P	H	F	L	N	R	F	E	P	I	T	I	L	S	A	L	A	S
Template Known Secondary structure											T	T		S	S	S	S	G	G	G	S	T	T			T	T	G	G	G															T	T		S								S				T	T	S						S													T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		V	T	Q	R	L	K	F	L	V	A	L	R	P	S	V	T	S	P	T	V	A	A	R	Q	A	A	T	L	D	R	L	S	N	G	R	A	L	F	N	L	V	T	G	S	D	P	Q	E	L	A	G	D	G	.	.	V	F	L	D	H	S	E	R	Y	E	A	S	A	E	F	T	Q	V	W	R	R	L	L	Q	R
Query Conservation																																																							.	.
Alig confidence																																																							.	.
Template Conservation
Template Sequence		V	T	K	N	I	G	L	V	G	T	F	S	T	S	F	T	E	P	F	T	I	S	R	Q	L	M	S	L	D	H	I	S	G	G	R	A	G	W	N	L	V	T	S	P	Q	E	G	A	A	R	N	H	S	K	S	N	L	P	E	H	T	E	R	Y	E	I	A	Q	E	H	L	D	V	V	R	G	L	W	N	S
Template Known Secondary structure		T		S	S									T	T	T	S																T	T	S								S								T	T	T	T		S	S																							T	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
																							146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	V	D	F	N	G	K	H	I	H	V	R	G	A	K	L	L	F	P	A	I	Q	Q	P	Y	P	P	L	Y	F	G	G	S	S	D	V	A	Q	E	L	A	A	E	Q	V	D	L	Y	L	T	W	G	E	P	P	E	L	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																																														.
Template Sequence		W	E	H	D	A	F	I	H	N	K	K	T	G	Q	F	F	D	Q	A	K	L	H	R	L	N	H	K	G	K	Y	F	Q	V	E	G	P	L	N	I	G	R	S	K	Q	.	G	E	P	V	V	F	Q	A	G	S	S	E	T	G	R	Q	F	A	A	K	N	A	D	A	I	F	T	H	S	N	S	L	E	E	T
Template Known Secondary structure		B		T	T					B	T	T	T	T	B		S		G	G	G	B								S	S								S	S			B	T	T	.	B	S									S												S							S
Template Predicted Secondary structure																																														.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		K	E	K	I	E	Q	V	R	A	K	A	A	A	H	G	R	K	I	.	.	.	R	F	G	I	R	L	H	V	I	V	R	E	T	N	D	E	A	W	Q	A	A	E	R	L	I	S	H	L	D	D	E	T	I	A	K	A	Q	A	A	F	A	R	T	D	S	V	G	Q	Q	R	M	A	A	L	H	N	G	K	R
Query Conservation																				.	.	.
Alig confidence																				.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	F	Y	A	D	V	K	S	R	A	A	D	E	G	R	D	P	S	S	V	R	I	F	P	G	I	S	P	I	V	A	D	T	E	E	E	A	E	K	K	Y	R	E	F	A	E	L	I	P	I	E	N	A	V	T	E	A	K	A	R	N	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T			G	G	G	S												S	S													T	T	S		G	G	G	G							S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		D	N	L	E	I	S	P	N	L	W	A	G	V	G	L	V	R	G	G	A	G	T	A	L	V	G	D	G	P	T	V	A	A	R	I	N	E	Y	A	A	L	G	.	I	D	S	F	V	L	S	G	Y	P	H	L	E	E	A	Y	R	V	G	E	L	L	F	P	L	L	D	V	A	I	P	E	I	P	Q	P	Q
Query Conservation																																												.
Alig confidence		.	.	.	.	.	.	.	.	.																																		.								.																						.
Template Conservation		.	.	.	.	.	.	.	.	.																																										.																						.
Template Sequence		.	.	.	.	.	.	.	.	.	L	R	E	V	A	Q	E	M	A	F	P	R	T	L	F	I	G	T	P	E	R	V	A	S	L	I	E	T	W	F	N	A	E	A	A	D	G	F	I	V	G	.	S	D	I	P	G	T	L	D	A	F	V	E	K	V	I	P	I	L	Q	E	R	.	G	L	Y	R	Q	D	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.										S				S	S																	T	T	S		S						.			S	T	T																T	.	T	S	S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																										.																						.
Template SS confidence
											349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	N	P	Q	G	E	A	V	A	N	D	F	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	G	T	L	R	E	N	L	G	L	G	I	P	Q
Template Known Secondary structure		S		S	S						T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions