Job Description P77044 Confidence 100.00% Date Thu Jan 5 12:25:30 GMT 2012 Rank 43 Aligned Residues 265 % Identity 13% Template c2qmqA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:protein ndrg2; PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution Resolution 1.70 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																										.	.	.																					.	.
Query SS confidence																										.	.	.																					.	.
Query Sequence		S	R	F	L	N	V	E	E	A	G	K	T	L	R	I	H	F	N	D	C	G	Q	G	D	.	.	.	E	T	V	V	L	L	H	G	S	G	P	G	A	T	G	W	A	N	F	S	.	.	R	N	I	D	P	L	V	E	A	G	Y	R	V	I	L	L	D	C	P	G	W	G	K	S	D	S	V	V	N	S	G
Query Conservation																										.	.	.																					.	.
Alig confidence									.	.	.			.												.	.	.																					.	.
Template Conservation									.	.	.			.
Template Sequence		T	H	S	V	E	T	P	.	.	.	Y	G	.	S	V	T	F	T	V	Y	G	T	P	K	P	K	R	P	A	I	F	T	Y	H	D	V	G	L	N	Y	K	S	C	F	Q	P	L	F	R	F	G	D	M	Q	E	I	I	Q	N	F	V	R	V	H	V	D	A	P	G	M	E	E	G	A	P	V	F	P	L	G
Template Known Secondary structure								T	.	.	.	T		.								S				T	T										T	T												T	S								T	T	S								T	T	T	S	T	T						T	T
Template Predicted Secondary structure									.	.	.			.
Template SS confidence
		40	.	.	.	.	.	.				.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		92				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		S	.	.	.	R	S	D	L	N	A	R	I	L	K	S	V	V	D	Q	L	D	I	A	K	I	H	L	L	G	N	S	M	G	G	H	S	S	V	A	F	T	L	K	W	P	E	R	V	G	K	L	V	L	M	G	G	G	T	G	G	M	S	L	F	T	P	M	P	T	E	G	I	K	R	L	N	Q	L	Y	R
Query Conservation			.	.	.
Alig confidence			.	.	.																																																								.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.
Template Sequence		Y	Q	Y	P	S	L	D	Q	L	A	D	M	I	P	C	I	L	Q	Y	L	N	F	S	T	I	I	G	V	G	V	G	A	G	A	Y	I	L	S	R	Y	A	L	N	H	P	D	T	V	E	G	L	V	L	I	N	I	D	P	N	.	.	.	.	.	.	A	K	G	W	M	D	W	A	A	H	K	L	T	G	L
Template Known Secondary structure													T									T										T														G	G	G								S					.	.	.	.	.	.															T
Template Predicted Secondary structure																																																													.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.							.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	T	I	E	N	L	K	L	M	M	D	I	F	V	F	D	T	S	D	L	T	D	A	L	F	E	A	R	L	N	N	M	L	S	R	R	D	H	L	E	N	F	V	K	S	L	E	A	N	P	K	Q	F	P	D	F	G	P	R	L	A	E	I	K	A	Q	T	L	I	V	W	G	R	N	D	R	F	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	S	I	P	D	M	I	L	G	H	L	F	S	Q	E	E	L	S	G	N	S	E	L	I	Q	K	Y	R	G	I	I	Q	H	A	P	N	L	E	N	I	E	L	Y	W	N	S	Y	N	N	R	R	D	L	N	F	E	R	G	G	E	T	T	L	K	C	P	V	M	L	V	V	G	D	Q	A	P	H	E	D
Template Known Secondary structure		T	S											S							T	T													T		T	T													T						S			T	T						S								T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	A	G	L	R	L	L	S	G	I	A	G	S	E	L	H	I	F	R	D	C	G	H	W	A	Q	W	E	H	A	D	A	F	N	Q	L	V	L	N	F	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	V	E	C	N	S	K	L	D	P	T	Q	T	S	F	L	K	M	A	D	S	G	G	Q	P	Q	L	T	Q	P	G	K	L	T	E	A	F	K	Y	F	L	Q
Template Known Secondary structure										S		G	G	G							T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions