Phyre 2 alignment of P00959 with d1f7ua2

Job Description P00959
Confidence 99.98% Date Thu Jan 5 10:57:21 GMT 2012

Rank 30 Aligned Residues 310

% Identity 15% Template d1f7ua2

SCOP info Adenine nucleotide alpha hydrolase-like Nucleotidylyl transferase Class I aminoacyl-tRNA synthetases (RS), catalytic domain

Resolution 2.20

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	K	K	I	L	V	T	C	A	L	P	Y	A	N	G	S	I	H	L	G	H	M	L	E	H	I	Q	A	D	V	W	V	R	Y	Q	R	M	R	G	H	E	V	N	F	I	C	A	D	D	A	H	G	T	P	I	M	L	K	A	Q	Q	L	G	I	T	P	E	Q	M	I	G	E	M	S	Q	E	H	Q	T	D
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	N	K	K	V	I	I	E	F	S	S	P	N	I	A	K	P	F	H	A	G	H	L	R	S	T	I	I	G	G	F	L	A	N	L	Y	E	K	L	G	W	E	V	I	R	M	N	Y	L	G	D	W	G	K	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	L	A	V	G
Template Known Secondary structure												B	T	T	S			B	G	G	G																	T	T										B			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																				.	.	.	200	.	.

	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	A	G	F	N	I	S	Y	D	N	Y	H	S	T	H	S	E	E	N	R	Q	L	S	E	L	I	Y	S	R	L	K	E	N	G	F	I	K	N	R	T	I	S	Q	L	Y	D	P	E	K	G	M	F	L	P	D	R	F	V	K	G	T	C	P	K	C	K	S	P	D	Q	Y	G	D	N	C	E	V	C	G	A
Query Conservation
Alig confidence										.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	E	R	Y	G	N	E	E	A	.	L	V	K	D	P	I	H	H	L	F	D	V	Y	V	R	I	N	K	D	I	E	E	E	G	D	S	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	Q	S	T	N	G	K	A	R	E
Template Known Secondary structure										.																							S	T	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure										.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	203	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.																																240	.	.	.	.	.	.	.	.	.	250

	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	Y	S	P	T	E	L	I	E	P	K	S	V	V	S	G	A	T	P	V	M	R	D	S	E	H	F	F	F	D	L	P	S	F	S	E	M	L	Q	A	W	T	R	S	G	A	L	Q	E	Q	V	A	N	K	M	Q	E	W	F	E	S	G	L	Q	Q	W	D	I	S	R	D	A	P	Y	F	G	F	E	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Y	F	K	R	M	E	D	G	D	E	E	A	L	K	I	W	K	R	F	R	E	F	S	I	E	K	Y	I	D	T	Y	A	R	L	N	I	K	Y	D	V	Y	S	G	E	S	Q	V	S	K	E	S	M	L	K	A	I	D	L	F	K	E	K	G	L	T	H	E	D	K	G	A	V	L	I	D	L	T	K	F	N
Template Known Secondary structure								T																										T	T				S					G	G	G																T	T						T	T						G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

	245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	A	P	G	K	Y	F	Y	V	W	L	D	A	P	I	G	Y	M	G	S	F	K	N	L	C	D	K	R	G	D	S	V	S	F	D	E	Y	W	K	K	D	S	T	A	E	L	Y	H	F	I	G	K	D	I	V	Y	F	H	S	L	F	W	P	A	M	L	E	G	S	N	F	R	K	P	S	N	L	F	V	H
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.												.
Template Conservation																																				.	.	.	.	.	.	.	.	.												.
Template Sequence	K	K	L	G	K	A	I	V	Q	K	S	D	G	T	T	L	Y	L	T	R	D	V	G	A	A	M	D	R	Y	E	K	Y	H	F	D	.	.	.	.	.	.	.	.	.	K	M	I	Y	V	I	A	S	Q	Q	D	.	L	H	A	A	Q	F	F	E	I	L	K	Q	M	G	F	E	W	A	K	D	L	Q	H	V
Template Known Secondary structure	T	T	T								T	T	S																						S	.	.	.	.	.	.	.	.	.								G	G	G		.													T	T		G	G	G	G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.												.
Template SS confidence
	331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.										.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

	325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350																													.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	Y	V	T	V	N	G	A	K	M	S	K	S	R	G	T	F	I	K	A	S	T	W	L	N	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	A	D	S	L	R	Y	Y	Y	T	A	K	L	S	S	R	I	D	D	I	D	L	N	L	E
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation					.	.																																																																.	.
Template Sequence	N	F	G	M	.	.	V	Q	G	M	S	T	R	K	G	T	V	V	F	L	D	N	I	L	E	E	T	K	E	K	M	H	E	V	M	K	K	N	E	N	K	Y	A	Q	I	E	H	P	E	E	V	A	D	L	V	G	I	S	A	V	M	I	Q	D	M	Q	G	K	R	.	.	I	N	N	Y	E	F	K	W	E
Template Known Secondary structure					.	.			S			G	G	G	T				B																		T						T	T		S																				S	S		T	.	.	T
Template Predicted Secondary structure					.	.																																																																.	.
Template SS confidence
	401	.	.	.			.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.			.	.	470	.	.	.	.	.	.

	377	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	M	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	477	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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