Job Description P00959 Confidence 100.00% Date Thu Jan 5 10:57:21 GMT 2012 Rank 3 Aligned Residues 509 % Identity 24% Template c3kflA_ PDB info PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: leishmania major methionyl-trna synthetase in complex with2 methionyladenylate and pyrophosphate Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	K	I	L	V	T	C	A	L	P	Y	A	N	G	S	I	H	L	G	H	M	L	E	H	I	Q	A	D	V	W	V	R	Y	Q	R	M	R	G	H	E	V	N	F	I	C	A	D	D	A	H	G	T	P	I	M	L	K	A	Q	Q	L	G	I	T	P	E	Q	M	I	G	E	M	S	Q	E	H	Q	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	V	F	F	A	T	T	P	I	Y	Y	V	N	A	S	P	H	I	G	H	V	Y	S	T	L	I	V	D	V	L	G	R	Y	H	R	V	K	G	E	E	V	F	V	M	T	G	T	D	E	H	G	Q	K	V	A	E	A	A	A	K	Q	G	V	S	P	M	D	F	T	T	S	V	S	S	E	F	K	Q	C
Template Known Secondary structure															S	S																								T													S										T	T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	G	F	N	I	S	Y	D	N	Y	H	S	T	H	S	E	E	N	R	Q	L	S	E	L	I	Y	S	R	L	K	E	N	G	F	I	K	N	R	T	I	S	Q	L	Y	D	P	E	K	G	M	F	L	P	D	R	F	V	K	G	T	C	P	K	C	K	S	P	D	Q	Y	G	D	N	C	E	V	C	G	A
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Q	E	M	N	Y	D	M	N	Y	F	I	R	T	T	N	P	T	H	E	K	L	V	Q	D	I	W	K	K	L	A	A	K	G	D	I	Y	L	G	K	Y	E	G	W	Y	S	V	S	D	E	S	F	L	T	A	Q	N	V	A	D	G	V	D	R	D	G	K	P	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T				S					T	T	S																		T													T	T	T	T					G	G	G							T	T	S			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.																													.	.	.
Query SS confidence																																																.	.	.																													.	.	.
Query Sequence		T	Y	S	P	T	E	L	I	E	P	K	S	V	V	S	G	A	T	P	V	M	R	D	S	E	H	F	F	F	D	L	P	S	F	S	E	M	L	Q	A	W	T	R	S	G	A	.	.	.	L	Q	E	Q	V	A	N	K	M	Q	E	W	F	E	S	G	L	Q	Q	W	D	I	S	R	D	A	P	Y	.	.	.
Query Conservation																																																.	.	.																													.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																							.	.	.																													.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	C	K	V	S	L	E	S	G	H	V	V	T	W	V	E	E	E	N	Y	M	F	R	L	S	A	F	R	E	R	L	L	K	Y	F	H	D	H	P	N	C	I	V	P	E	F	R	R	R	E	V	I	K	T	V	E	K	G	L	F	D	L	S	I	S	R	K	R	E	S	V	M	N
Template Known Secondary structure		.	.	.	.	.	.	.	.					T	T	T	S		B													G	G	G	G												T	T	S			S																								G	G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	F	E	I	P	N	A	P	G	K	Y	F	Y	V	W	L	D	A	P	I	G	Y	M	G	S	F	K	N	L	C	D	K	R	G	D	S	V	S	F	D	E	Y	W	K	K	D	S	T	A	E	L	Y	H	F	I	G	K	D	I	V	Y	F	H	S	L	F	W	P	A	M	L	E	G	S	N	F	R	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	S	I	P	V	P	G	D	E	R	H	C	I	Y	V	W	L	D	A	L	F	N	Y	Y	T	G	A	L	T	R	V	A	T	D	G	T	E	T	L	D	E	D	H	H	A	L	N	R	W	P	A	D	V	H	V	V	G	K	D	I	L	K	F	H	A	I	Y	W	P	A	F	L	M	S	A	E	L	P	L	P
Template Known Secondary structure			S				T	T														T												T	T	S						S	S	S	T	T	T	T			S		S						G	G	G						T									T	T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	F	V	H	G	Y	V	T	V	N	G	A	K	M	S	K	S	R	G	T	F	I	K	A	S	T	W	L	N	H	F	D	A	D	S	L	R	Y	Y	Y	T	A	K	L	S	S	R	I	D	D	I	D	L	N	L	E	D	F	V	Q	R	V	N	A	D	I	V	N	K	V	V	N	L	A	S	R	N	A
Query Conservation
Alig confidence																																																	.
Template Conservation																																																	.
Template Sequence		E	R	L	V	S	H	G	W	W	T	K	D	H	K	K	I	S	K	S	L	G	N	A	F	D	P	V	E	K	A	K	E	F	G	I	D	A	L	K	Y	F	L	M	R	E	S	N	.	F	Q	D	D	G	D	Y	S	D	K	N	M	V	A	R	L	N	G	E	L	A	D	T	L	G	N	L	V	S	R	C	V
Template Known Secondary structure		S											T	T					T	T	T	T																											.	S	S																	T	T	T	T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.		.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.				.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		G	F	I	N	K	R	F	D	G	V	L	A	S	.	.	.	E	L	A	D	P	Q	L	Y	K	T	F	T	D	A	A	E	V	I	G	E	A	W	E	S	R	E	F	G	K	A	V	R	E	I	M	A	L	A	D	L	A	N	R	Y	V	D	E	Q	A	P	W	V	V	A	K	Q	E	G	R	D	A	D	L	Q
Query Conservation															.	.	.
Alig confidence															.	.	.																																																									.	.
Template Conservation																																																																										.	.
Template Sequence		A	P	K	I	N	V	N	G	M	W	P	E	P	A	E	Y	S	E	S	D	K	T	L	I	A	S	L	N	N	L	A	G	T	V	D	H	Y	Y	C	L	P	D	I	Q	H	A	L	I	A	I	F	D	V	L	R	S	L	N	A	Y	V	T	E	N	A	P	W	K	L	V	K	M	.	.	D	T	A	R	L	G
Template Known Secondary structure			T	T	T	S	T	T	S	B																															T	T																													T	T	T	.	.
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.			.	660	.	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510							.	.	.	.	.	.	.	.	.	520	.	.	.	.				.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.															.	.	.
Query SS confidence																																					.	.	.	.	.	.															.	.	.
Query Sequence		A	I	C	S	M	G	I	N	L	F	R	V	L	M	T	Y	L	K	P	V	L	P	K	L	T	E	R	A	E	A	F	L	N	T	E	.	.	.	.	.	.	L	T	W	D	G	I	Q	Q	P	L	L	G	H	K	.	.	.	V	N	P	F	K	A	L	Y	N	R	I	D
Query Conservation																																					.	.	.	.	.	.															.	.	.
Alig confidence																																					.	.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		T	V	L	Y	V	T	M	E	G	L	R	I	C	T	M	F	L	Q	P	V	M	P	Q	K	A	K	E	I	M	D	A	L	G	V	P	E	A	A	R	V	G	M	E	N	Y	L	F	G	I	V	K	P	G	T	K	I	A	G	L	A	E	G	Q	V	V	F	Q	K	V	T
Template Known Secondary structure																			T	T	T	S												T			G	G	G	S	S	S	G	G	G	S	S	S			S		T	T		B						T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.