Job Description P00959 Confidence 99.47% Date Thu Jan 5 10:57:21 GMT 2012 Rank 58 Aligned Residues 261 % Identity 17% Template c3al0C_ PDB info PDB header:ligase/rna Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c, glutamyl- PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state. Resolution 3.37 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	A	N	G	S	I	H	L	G	H	M	L	E	H	I	Q	A	D	V	W	V	R	Y	Q	R	M	R	G	H	E	V	N	F	I	C	A	D	D	A	H	G	T	P	I	M	L	K	A	Q	Q	L	G	I	T	P	E	Q	M	I	G	E	M	S	Q	E	H	Q	T	D	F	A	G	F	N	I	S	Y	D	N
Query Conservation
Alig confidence																									.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	P	T	G	H	L	H	V	G	G	A	R	T	A	L	F	N	W	M	F	A	R	.	.	.	.	.	K	E	G	G	K	F	I	L	R	I	E	D	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	R	S	S	R	E	Y	E	Q	Q	I	L	E	S	L	R	W	C	G	L	D	W	D	E
Template Known Secondary structure				S	S	S			B																.	.	.	.	.			T							B					.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S																T	T				S	B
Template Predicted Secondary structure																									.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.	.	.	.	.	170	.														.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		95	.	.	.								.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.
Query Sequence		Y	H	S	T	.	.	.	.	.	.	.	H	S	E	E	N	R	Q	L	S	E	L	I	Y	S	R	L	K	E	N	G	F	I	K	N	R	T	I	S	Q	L	Y	D	P	E	K	G	M	F	L	P	D	R	F	V	K	G	T	C	P	K	C	K	S	P	D	Q	Y	G	D	N	C	E	V	C	G	A	T	Y	S
Query Conservation						.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.																								.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	D	I	G	G	D	F	G	P	Y	R	Q	S	E	R	L	E	I	Y	R	E	Y	A	E	K	L	V	E	D	K	R	A	Y	.	.	.	.	.	.	.	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	D	K	E	D	P	S	K	E	L	F
Template Known Secondary structure		B	T	T	T	B		T	T				B	S	T	T															T	T	T			.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230								.	.																										.	.	.	.	.	.	.	240	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		P	T	E	L	I	E	P	K	S	V	V	S	G	A	T	P	V	M	R	D	S	E	H	F	F	F	D	L	P	S	F	S	E	M	L	Q	A	W	T	R	S	G	A	L	Q	E	Q	V	A	N	K	M	Q	E	W	F	E	S	G	L	Q	Q	W	D	I	S	R	D	A	P	Y	F	G	.	F	E	I	P	N	A
Query Conservation																																																																											.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	Y	E	Y	P	H	E	Y	K	E	K	G	H	P	V	T	I	K	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	P	G	K	T	S	F	E	D	L	L	K	G	Y	M	E	F	D	N	S
Template Known Secondary structure				S	S								T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S							T	T	T		S					S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.																																							.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		247			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		P	.	.	G	K	Y	F	Y	V	W	L	D	A	P	I	G	Y	M	G	S	F	K	N	L	C	D	K	R	G	D	S	V	S	F	D	E	Y	W	K	K	D	S	T	A	E	L	Y	H	F	I	G	K	D	I	V	Y	F	H	S	L	F	W	P	A	M	L	E	G	S	N	F	R	K	P	S	N	L	F	V	H
Query Conservation			.	.
Alig confidence			.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		T	L	E	D	F	I	I	M	K	S	N	G	F	P	T	Y	N	F	A	V	V	V	D	D	H	L	M	R	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	F	R	G	E	D	H	L	S	N	.	T	P	K	Q	L	M	I	Y	E	A	F	G	W	E	A	P	V	F	M	H	I	P
Template Known Secondary structure		S	S								T	T	S															T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B					G	G	G	G	G	G	.									T	T	T	T					B
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.																	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	V	T	V	N	G	A	K	M	S	K	S	R	G	T	F	I	K	A	S	T	W	L	N	H	F	D	A	D	S	L	R	Y	Y	Y	T	A	K	L	S	S	R	I	D	D	I	D	L	N	L	E	D	F	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	L	G	S	D	R	T	P	L	S	K	R	H	G	A	T	S	V	E	H	F	R	R	E	G	I	L	S	R	A	L	M	N	Y	L	A	L	L	G	W	R	V	E	G	D	E	I	F	T	I	E	E	K	L	Q
Template Known Secondary structure				B		T	T	S	S	B			T	T	T		S	S	B							T	T											T	T	T	T	B				S		S				T	T	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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