Job Description P00959 Confidence 99.91% Date Thu Jan 5 10:57:21 GMT 2012 Rank 43 Aligned Residues 224 % Identity 17% Template c2e8gB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:hypothetical protein ph0536; PDBTitle: the structure of protein from p. horikoshii at 1.7 angstrom2 resolution Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	L	A	D	P	Q	L	Y	K	T	F	T	D	A	A	E	V	I	G	E	A	W	E	S	R	E	F	G	K	A	V	R	E	I	M	A	L	A	D	L	A	N	R	Y	V	D	E	Q	A	P	W	V	V	A	K	Q	E	G	R	D	A	D	L	Q	A	I	C	S	M	G	I	N	L	F	R	V	L	M	T
Query Conservation
Alig confidence																																					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	D	T	S	K	D	Y	R	L	L	V	A	E	K	S	V	E	L	F	I	R	T	I	E	G	A	K	F	R	G	Q	W	D	K	K	.	.	.	.	.	R	S	I	Q	L	A	K	E	M	I	P	.	.	.	.	.	.	.	.	.	.	.	D	I	Q	A	L	R	Y	S	Y	I	D	P	E	E	L	V	D	T
Template Known Secondary structure				G	G	G																				T					S	S					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.							T	T								T	T	S
Template Predicted Secondary structure																																					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.						.	.	.	40	.	.	.	.	.	.	.												.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	K	P	V	L	P	K	L	T	E	R	A	E	A	F	L	N	T	E	L	T	W	D	G	I	Q	Q	P	L	L	G	H	K	V	N	P	F	K	A	L	Y	N	R	I	D	M	R	Q	V	E	A	L	V	E	A	S	K	E	E	V	K	A	A	A	A	P	V	T	G	P	L	A	D	D	P	I	Q	E	T
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Template Sequence		P	Q	M	K	D	L	K	E	K	A	K	G	I	I	E	A	L	.	.	.	.	.	.	.	.	G	G	E	D	W	H	H	K	F	L	S	Q	A	S	R	E	D	R	E	K	V	E	E	Q	V	A	R	I	K	F	F	L	N	T	I	L	N	L	D	R	R	L	K	L	G	K	I	N	.	.	.	.	.	.	.
Template Known Secondary structure																		T	.	.	.	.	.	.	.	.	T	S	T	T							T	T			T	T	T																				T							T		S			.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.									.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	F	D	D	F	A	K	V	D	L	R	V	A	L	I	E	N	A	E	F	V	E	G	S	D	K	L	L	R	L	T	L	D	L	G	G	E	K	R	N	V	F	S	G	I	R	S	A	Y	P	D	P	Q	A	L	I	G	R	H	T	I	M	V	A	N	L	A	P	R	K	M	R	F	G	I	S	E	G	M
Query Conservation
Alig confidence		.	.	.																																																.				.	.	.	.	.	.
Template Conservation		.	.	.																																																.				.	.	.	.	.	.
Template Sequence		.	.	.	D	P	V	I	A	V	D	I	V	V	G	E	V	M	S	V	G	K	H	P	S	A	D	R	L	L	V	T	N	V	N	I	G	E	R	A	V	T	V	V	T	N	D	L	T	V	K	.	E	G	N	.	.	.	.	.	.	R	V	A	V	A	L	L	P	P	R	N	F	F	G	I	V	S	E	G	M
Template Known Secondary structure		.	.	.		G	G	G	G	S														T	T		T	T									S	S								S		T	T			.	T	T		.	.	.	.	.	.													T	T
Template Predicted Secondary structure		.	.	.																																																.				.	.	.	.	.	.
Template SS confidence
					131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180							.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	A	A	G	P	G	G	K	D	I	F	L	L	S	P	D	A	G	A	K	P	G	H	Q	V
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		F	L	G	A	G	E	G	V	L	.	K	N	V	K	G	E	I	G	G	L	P	K	G	I	P	L
Template Known Secondary structure				B		S	S		B		.		B		B	S		T	T	S			B	S			G
Template Predicted Secondary structure											.
Template SS confidence
		201	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions