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Job DescriptionP00959
Confidence100.00%DateThu Jan 5 10:57:21 GMT 2012
Rank11Aligned Residues482
% Identity22%Templatec1wkbA_
PDB info PDB header:ligaseChain: A: PDB Molecule:leucyl-trna synthetase; PDBTitle: crystal structure of leucyl-trna synthetase from the2 archaeon pyrococcus horikoshii reveals a novel editing3 domain orientation
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.....
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Query Sequence  AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ. . . . . . . . . . . . . . . . . . .
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Template Sequence  EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVP
Template Known Secondary structure  GG


BTTS

BT




BB

BSTT
TS


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   33......40.........50.........60.........70.........80.........90.........100.........110..
 
   66...70.........80.........90 .........100 .........110.........120.........130......
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Query Sequence  . . . . . LGITPEQMIGEMSQEHQTDFAGFNI. . SYDNYHSTHS. . EENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMF
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Template Sequence  EEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTP
Template Known Secondary structure  GGGSTT



GGG

B
STTSTT
TTTT
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   113......120.........130.........140.........150.........160.........170.........180.........190..
 
   137..140.....
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Query Sequence  LPDRFVKGT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYK
Template Known Secondary structure 

TT

SB
SS



SS
S

S
GGGGGG


TTS
TT
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   193......200.........210.........220.........230.........240.........250.........260.........270..
 
   146...150.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CPKCKSPDQYGDNC. . . . . . . . . . . . . .
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Template Sequence  LSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDID
Template Known Secondary structure  TTSS

TTTTTTT

SSS


TTS
TTSTTS

TTT



S

S


TT
S

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   273......280.........290.........300.........310.........320.........330.........340.........350..
 
   160.........170....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EVCGATYSPTELIEP
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Template Conservation                
                                 
         
   
   
             
Template Sequence  PRIVFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNV
Template Known Secondary structure 





TT

SGGGTS


TT
S
TS

SGGGTTTTTSSSS

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   353......360.........370.........380.........390.........400.........410.........420.........430..
 
   175....180.........190...... ...200.........210.........220.........230.........240....
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Query Sequence  KSVVSGATPVMRDSEHFFFDLP. . SFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIP. . . . . . . .
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Template Sequence  ISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKI. GLGTPLPWDPEWVIE
Template Known Secondary structure  B
TTS
B

TT
TSSGGG



SS.SBS
TT
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   449450.........460.........470.........480.........490.........500.........510.. .......520.......
 
   245....250.........260.........270.... .....280.......
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Query Sequence  NAPGKYFYVWLDAPIGYMGSFKNLCDKRGD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SVSFDEYWKKDST
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Template Sequence  SLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLD. .
Template Known Secondary structure  TTTSSSSTT


GGG

S


S


S
S..
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   528.530.........540.........550.........560.........570.........580.........590.........600.....
 
   288.290.........300.........310........ .320.........330.........340.........350.........360.....
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Query Sequence  AELYHFIGKDIVYFHSLFWPAMLEGSNFRKP. . SNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLS
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Template Sequence  . . . WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAE
Template Known Secondary structure  ...GGGTTTS
GGGS



TTB


TTTT


B


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   606...610.........620.........630.........640.........650.........660.........670.........680..
 
   366...370.........380.........390.........400.........410.........420.........430.........440.....
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Query Sequence  SRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREI
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Template Sequence  HD. SDFDWRRKEVGKLRK. . QIERFYELISQFAEY. . . EVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWA
Template Known Secondary structure  TT.


..T
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S




TT
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   683. .....690......... 700.........710.... .....720.........730.........740.........750......
 
   446... 450.........460.........470.........480.........490.........500........
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Query Sequence  MALA. DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN
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Template Sequence  FYSIMNDLRWYLRRTEGR. . . . . . . . . . DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG
Template Known Secondary structure  TTTT
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TTTS

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   757..760.........770.... .....780.........790.........800.........810
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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