Return to main results Retrieve Phyre Job Id

Job DescriptionP21499
Confidence99.23%DateThu Jan 5 11:38:21 GMT 2012
Rank18Aligned Residues71
% Identity23%Templated1y14b1
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   642.......650.........660.........670.........680.........690.........700.........710.........720
Predicted Secondary structure 

































Query SS confidence 














































































Query Sequence  QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
Query Conservation   


 
 
 

 
   
 

 
    




 
  
  
 
  
     


   
  
 


 
 
 
  

     
Alig confidence 






















..













.





.....



























Template Conservation    



 
 
  
   
 

 

.. 
 
 
  
 
   .      .....          

 





 

 
   
Template Sequence  FKGEVVDGTVVSCSQHGFEVQVG. . PMKVFVTKHLMPQD. LTFNAS. . . . . YQSSEDVITIKSRIRVKIEGCISQVSSI
Template Known Secondary structure 
TT
TTT..TGGGS
TT.



.....
SS

TT
TT
Template Predicted Secondary structure 






..




.


.....











Template SS confidence 














































































   82.......90.........100.... .....110........ .120.... .....130.........140.........150..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions