Job Description P21499 Confidence 93.93% Date Thu Jan 5 11:38:21 GMT 2012 Rank 100 Aligned Residues 57 % Identity 19% Template c3trzE_ PDB info PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element Resolution 2.90 Å

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		85	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.	.	.						.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure									.	.													.	.	.	.	.	.	.													.	.	.	.	.
Query SS confidence									.	.													.	.	.	.	.	.	.													.	.	.	.	.
Query Sequence		V	K	G	T	V	I	G	.	.	H	R	D	G	Y	G	F	L	R	V	E	G	.	.	.	.	.	.	.	R	K	D	D	L	Y	L	S	S	E	Q	M	.	.	.	.	.	K	T	C	I	H	G	D	Q	V	L	A	Q	P	L	G	A	D	R	K	G	R	R	E	A	R	I
Query Conservation									.	.													.	.	.	.	.	.	.													.	.	.	.	.
Alig confidence									.	.													.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation
Template Sequence		G	A	G	I	C	K	W	F	N	V	R	M	G	F	G	F	L	S	M	T	A	R	A	G	V	A	L	D	P	P	V	D	V	F	V	H	Q	S	K	L	H	M	E	G	F	R	S	L	K	E	G	E	A	V	E	F	T	F	K	K	S	A	K	G	L	E	S	I	R	V	T
Template Known Secondary structure											T	T	T	T										T	T													G	G	G	B			S	S	S					T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions