Job Description P21499 Confidence 26.21% Date Thu Jan 5 11:38:21 GMT 2012 Rank 403 Aligned Residues 99 % Identity 16% Template c3p8bB_ PDB info PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Resolution 1.80 Å

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		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.						.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		T	R	D	V	A	D	W	L	K	C	D	F	M	L	D	Q	V	G	N	V	F	K	G	V	I	S	S	V	T	G	F	G	F	F	V	R	L	D	D	L	F	.	.	.	.	.	I	D	G	L	V	H	V	S	S	L	D	N	D	Y	Y	R	F	D	Q	V	G	Q	R	L	M	G	E	S	S	G	Q	T	Y	R
Query Conservation																																											.	.	.	.	.
Alig confidence																				.																							.	.	.	.	.
Template Conservation																				.
Template Sequence		E	E	T	T	A	K	L	I	Y	S	K	V	R	T	Y	N	L	P	.	I	Y	A	I	L	A	P	S	R	V	K	G	Y	I	F	V	E	A	P	N	K	G	V	V	D	E	A	I	R	G	I	R	H	A	R	G	V	L	P	G	E	V	P	F	K	E	I	E	H	F	L	E	E	K	P	A	V	S	G	L	E
Template Known Secondary structure																	T			.								T	T			S							S	S									T	T		T	T						S	S		B		G	G	G	T	G	G	G				S		T	T	T	T
Template Predicted Secondary structure																				.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		702	.	.	.	.	.	.	.											710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	D	R	V	E	V	R	.	.	.	.	.	.	.	.	.	.	V	E	A	V	N	M	D	E	R	K	I	D	F	S	L	I	S
Query Conservation										.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	D	L	V	E	V	I	A	G	P	F	K	G	Q	K	A	K	V	V	K	I	D	E	S	K	D	E	V	V	V	Q	F	I	D
Template Known Secondary structure		T	T							S	S	T	T	T	T										T	T	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions