Job Description P21499 Confidence 99.56% Date Thu Jan 5 11:38:21 GMT 2012 Rank 10 Aligned Residues 144 % Identity 16% Template c3h0gS_ PDB info PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase ii subunit rpb7; PDBTitle: rna polymerase ii from schizosaccharomyces pombe Resolution 3.65 Å

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		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	A	H	F	T	S	P	I	R	R	Y	P	D	L	T	L	H	R	A	I	K	Y	L	L	A	K	E	Q	G	H	Q	G	N	T	T	E	T	G	G	Y	H	Y	S	M	E	E	M	L	Q	L	G	Q	H	C	S	M	A	E	R	R	A	D	E	A	T	R	D	V	A	D	W	L	K	C	D	F	M	L	D
Query Conservation
Alig confidence														.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.													.	.	.	.	.	.	.	.
Template Sequence		H	P	S	Y	F	G	P	R	M	Q	D	Y	.	.	.	.	L	K	A	K	L	L	A	D	V	E	G	T	.	.	.	.	.	.	.	.	C	S	G	Q	Y	G	Y	I	I	C	V	L	D	S	N	T	I	D	I	D	K	G	R	V	V	P	G	Q	G	F	A	E	F	E	V	K	Y	R	A	V	L	W	R	P
Template Known Secondary structure			G	G	G		T	T	T					.	.	.	.										T	T		.	.	.	.	.	.	.	.			T	T	T								T	T	T	S										T	T	T
Template Predicted Secondary structure														.	.	.	.													.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.									.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	G	N	V	F	K	G	V	I	S	S	V	T	G	F	G	F	F	V	R	L	D	D	L	F	I	D	G	L	V	H	V	S	S	L	D	N	D	Y	Y	R	F	D	Q	V	G	Q	R	L	M	G	E	S	S	G	Q	T	Y	R	L	G	D	R	V	E	V	R	V	E	A	V	N	M	D	E	R	K	I
Query Conservation
Alig confidence																									.	.																	.
Template Conservation																									.	.																	.
Template Sequence		F	R	G	E	V	V	D	A	I	V	T	T	V	N	K	M	G	F	F	A	N	I	G	.	.	P	L	N	V	F	V	S	S	H	L	V	P	P	D	M	K	.	F	D	P	T	A	N	P	P	N	Y	S	G	E	D	Q	V	I	E	K	G	S	N	V	R	L	K	I	V	G	T	R	T	D	A	T	E	I
Template Known Secondary structure			T	T												T	T						B	T	.	.	T	B						G	G	G	S		T	T			.		B	S	S	S	S	S		B			S	S	S					S	S													S	S	S
Template Predicted Secondary structure																									.	.																	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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