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Job DescriptionP21499
Confidence100.00%DateThu Jan 5 11:38:21 GMT 2012
Rank2Aligned Residues628
% Identity26%Templatec2wp8J_
PDB info PDB header:hydrolaseChain: J: PDB Molecule:exosome complex exonuclease dis3; PDBTitle: yeast rrp44 nuclease
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   80.........90...... ...100.........110... ......120.........130..
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Query Sequence  ERLDLVKGTVIGHRDGY. . GFLRVEGRKDDLYLSSE. QMKTCIHGDQVLAQPLGAD. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIE
Template Known Secondary structure  TTSS
SSBTT

TT
SS
STT

TT


GGG
B


S

B
GGGSSTT





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   269270.........280.........290.........300.........310.........320.........330.........340........
 
   133......140.........150....... ..160.........170.........180.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . RKGRREARIVRVLVPKTSQIVGRYF. . . . . . . . TEAGVGFVVPDDSRLSFDILIPPD
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Template Sequence  NTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLPK. VRIRTR
Template Known Secondary structure 






S

B
B




GGG

TT

S
SSTTS

.T
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   361........370.........380.........390.........400.........410.........420.........430... ......
 
   182.......190.........200.........210.........220.........230..... ....240.... ...
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Query Sequence  QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY. IWPQAVEQQ. . . . . . . . . . . . . VAG
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Template Sequence  RA. AELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDD
Template Known Secondary structure  TT.TGGGG

TT
SS
SS
STT


S


TTS
TTGGG



SSTT
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   440. ........450.........460.........470.........480.........490.........500.........510........
 
   248.250.........260.........270.........280.........290.........300.........310.........320.......
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Query Sequence  LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPS
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Template Sequence  PEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVD
Template Known Secondary structure 
GGGGG

TTS


TT
S



TTS

S
SSS
B
TT
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   519520.........530.........540.........550.........560.........570.........580.........590........
 
   328.330.........340.........350.........360.........370.........380.........390.........400.......
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Query Sequence  QVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHL
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Template Sequence  KRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQN. . . . DELTMGM
Template Known Secondary structure 
SS
TTTSS

BTS
TTS
BS
TT

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   599600.........610.........620.........630.........640.........650.........660....... ..670....
 
   408.410.........420.........430......... 440.........450.........460.........470....... ..480.....
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Query Sequence  EELHNLYKVLDKAREERGGISFESEEAKFIFN. AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA. KEPALFRI
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Template Sequence  RALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRR
Template Known Secondary structure  TTT




STTS

TT




SS





TTT
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   675....680.........690.........700.........710.........720.........730.........740.........750....
 
   486...490.........500.... .....510.........520.........530 .........540........ .550.....
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Query Sequence  HDKPSTEAITSFRSVLAEL. GLELPGGNKPEPRDYAELLESVADRP. . . DAEMLQTMLLRSMKQAIY. . . . . . DPENRGH
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Template Sequence  HAAPPSTNFEILNEMLNTRKNMSI. . . SLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRH
Template Known Secondary structure  B



GGGGS


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SS


SS
TTTTS


GGGS
GGGS
B
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   755....760.........770........ .780.........790.........800.........810.........820.........830.
 
   556...560.........570.........580.........590.........600.........610.........620.........630.....
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Query Sequence  FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK
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Template Sequence  YGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHR. . . . . . . . DKNKMDMICRNINRKHRNAQFAGRASIEYYV
Template Known Secondary structure  TTTTBSS



S
TTTBTTSS


GGGG........
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   832.......840.........850.........860.........870.. .......880.........890.........900...
 
   636...640.........650.........660.........670......... 680.........690.. .......700.........
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Query Sequence  CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN. . DYYRFDQVGQRLM. . . . GESSGQTYRLGDRVEVR
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Template Sequence  GQVMRNN. ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQ
Template Known Secondary structure  T.T

SS
TTT

GGGT
S
GGG
TTTT

TT

S
TT
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   904.....910 .........920.........930.........940.........950.........960.........970.........980..
 
   710... ......720.....
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Query Sequence  VEAV. NMDERKIDFSLI
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Template Conservation 
  
           
 
Template Sequence  VRSVMDPITSKRKAELL
Template Known Secondary structure 




SSS





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   983......990.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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