Job Description P21499 Confidence 100.00% Date Thu Jan 5 11:38:21 GMT 2012 Rank 2 Aligned Residues 628 % Identity 26% Template c2wp8J_ PDB info PDB header:hydrolase Chain: J: PDB Molecule:exosome complex exonuclease dis3; PDBTitle: yeast rrp44 nuclease Resolution 3.00 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																			.	.																		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.																		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	L	D	L	V	K	G	T	V	I	G	H	R	D	G	Y	.	.	G	F	L	R	V	E	G	R	K	D	D	L	Y	L	S	S	E	.	Q	M	K	T	C	I	H	G	D	Q	V	L	A	Q	P	L	G	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.	.																		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.																		.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	G	V	L	Y	Q	G	N	I	Q	I	S	E	Y	N	F	L	E	G	S	V	S	L	P	R	F	S	K	P	V	L	I	V	G	Q	K	N	L	N	R	A	F	N	G	D	Q	V	I	V	E	L	L	P	Q	S	E	W	K	A	P	S	S	I	V	L	D	S	E	H	F	D	V	N	D	N	P	D	I	E
Template Known Secondary structure			T	T	S	S									S	S	B	T	T							T	T		S	S						S					T	T			T	T										G	G	G		B				S			B		G	G	G	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
																									133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.									.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	G	R	R	E	A	R	I	V	R	V	L	V	P	K	T	S	Q	I	V	G	R	Y	F	.	.	.	.	.	.	.	.	T	E	A	G	V	G	F	V	V	P	D	D	S	R	L	S	F	D	I	L	I	P	P	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.																		.
Template Conservation																																																																											.
Template Sequence		N	T	T	V	I	S	D	K	Q	R	R	L	L	A	K	D	A	M	I	A	Q	R	S	K	K	I	Q	P	T	A	K	V	V	Y	I	Q	R	R	S	W	R	Q	Y	V	G	Q	L	A	P	S	S	V	D	P	Q	S	S	S	T	Q	N	V	F	V	I	L	M	D	K	C	L	P	K	.	V	R	I	R	T	R
Template Known Secondary structure																									S			B		B																				G	G	G			T	T			S									S	S	T	T	S			.						T
Template Predicted Secondary structure																																																																											.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.														.	.	.
Predicted Secondary structure																																																								.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	M	G	A	R	M	G	F	V	V	V	V	E	L	T	Q	R	P	T	R	R	T	K	A	V	G	K	I	V	E	V	L	G	D	N	M	G	T	G	M	A	V	D	I	A	L	R	T	H	E	I	P	Y	.	I	W	P	Q	A	V	E	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	G
Query Conservation																																																								.										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																																																				.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		R	A	.	A	E	L	L	D	K	R	I	V	I	S	I	D	S	W	P	T	T	H	K	Y	P	L	G	H	F	V	R	D	L	G	T	I	E	S	A	Q	A	E	T	E	A	L	L	L	E	H	D	V	E	Y	R	P	F	S	K	K	V	L	E	C	L	P	A	E	G	H	D	W	K	A	P	T	K	L	D	D
Template Known Secondary structure		T	T	.	T	G	G	G	G												T	T		S	S												S	S		S											T	T				S								T	T	S		T	T	G	G	G					S	S	T	T
Template Predicted Secondary structure				.
Template SS confidence
		440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	E	E	V	P	E	E	A	K	A	G	R	V	D	L	R	D	L	P	L	V	T	I	D	G	E	D	A	R	D	F	D	D	A	V	Y	C	E	K	K	R	G	G	G	W	R	L	W	V	A	I	A	D	V	S	Y	Y	V	R	P	S	T	P	L	D	R	E	A	R	N	R	G	T	S	V	Y	F	P	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	A	V	S	K	D	P	L	L	T	K	R	K	D	L	R	D	K	L	I	C	S	I	D	P	P	G	C	V	D	I	N	D	A	L	H	A	K	K	L	P	N	G	N	W	E	V	G	V	H	I	A	D	V	T	H	F	V	K	P	G	T	A	L	D	A	E	G	A	A	R	G	T	S	V	Y	L	V	D
Template Known Secondary structure									G	G	G	G	G					T	T	S								T	T		S												T	T	S															S		S	S	S											B					T	T
Template Predicted Secondary structure
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	I	P	M	L	P	E	V	L	S	N	G	L	C	S	L	N	P	Q	V	D	R	L	C	M	V	C	E	M	T	V	S	S	K	G	R	L	T	G	Y	K	F	Y	E	A	V	M	S	S	H	A	R	L	T	Y	T	K	V	W	H	I	L	Q	G	D	Q	D	L	R	E	Q	Y	A	P	L	V	K	H	L
Query Conservation
Alig confidence																																																																							.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		K	R	I	D	M	L	P	M	L	L	G	T	D	L	C	S	L	K	P	Y	V	D	R	F	A	F	S	V	I	W	E	L	D	D	S	A	N	I	V	N	V	N	F	M	K	S	V	I	R	S	R	E	A	F	S	Y	E	Q	A	Q	L	R	I	D	D	K	T	Q	N	.	.	.	.	D	E	L	T	M	G	M
Template Known Secondary structure						S	S						T	T	T	S	S			B	T	S													T	T	S														B	S															T	T			.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.					.	.	670	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.
Predicted Secondary structure																																		.																																							.
Query SS confidence																																		.																																							.
Query Sequence		E	E	L	H	N	L	Y	K	V	L	D	K	A	R	E	E	R	G	G	I	S	F	E	S	E	E	A	K	F	I	F	N	.	A	E	R	R	I	E	R	I	E	Q	T	Q	R	N	D	A	H	K	L	I	E	E	C	M	I	L	A	N	I	S	A	A	R	F	V	E	K	A	.	K	E	P	A	L	F	R	I
Query Conservation																																		.																																							.
Alig confidence																																		.																																							.
Template Conservation
Template Sequence		R	A	L	L	K	L	S	V	K	L	K	Q	K	R	L	E	A	G	A	L	N	L	A	S	P	E	V	K	V	H	M	D	S	E	T	S	D	P	N	E	V	E	I	K	K	L	L	A	T	N	S	L	V	E	E	F	M	L	L	A	N	I	S	V	A	R	K	I	Y	D	A	F	P	Q	T	A	M	L	R	R
Template Known Secondary structure																	T	T	T						S					T	T	S			T	T						S	S																															T	T	T
Template Predicted Secondary structure
Template SS confidence
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530				.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.							.	550	.	.	.	.	.
Predicted Secondary structure																					.																											.	.	.																			.	.	.	.	.	.
Query SS confidence																					.																											.	.	.																			.	.	.	.	.	.
Query Sequence		H	D	K	P	S	T	E	A	I	T	S	F	R	S	V	L	A	E	L	.	G	L	E	L	P	G	G	N	K	P	E	P	R	D	Y	A	E	L	L	E	S	V	A	D	R	P	.	.	.	D	A	E	M	L	Q	T	M	L	L	R	S	M	K	Q	A	I	Y	.	.	.	.	.	.	D	P	E	N	R	G	H
Query Conservation																					.																											.	.	.																			.	.	.	.	.	.
Alig confidence																					.					.	.	.																				.	.	.																			.	.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence		H	A	A	P	P	S	T	N	F	E	I	L	N	E	M	L	N	T	R	K	N	M	S	I	.	.	.	S	L	E	S	S	K	A	L	A	D	S	L	D	R	C	V	D	P	E	D	P	Y	F	N	T	L	V	R	I	M	S	T	R	C	M	M	A	A	Q	Y	F	Y	S	G	A	Y	S	Y	P	D	F	R	H
Template Known Secondary structure		B					G	G	G	G												S				.	.	.			S	S														S	S		T	T											T	T	S								G	G	G	S		G	G	G	S		B
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		755	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.				.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	L	A	L	Q	S	Y	A	H	F	T	S	P	I	R	R	Y	P	D	L	T	L	H	R	A	I	K	Y	L	L	A	K	E	Q	G	H	Q	G	N	T	T	E	T	G	G	Y	H	Y	S	M	E	E	M	L	Q	L	G	Q	H	C	S	M	A	E	R	R	A	D	E	A	T	R	D	V	A	D	W	L	K
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		Y	G	L	A	V	D	I	Y	T	H	F	T	S	P	I	R	R	Y	C	D	V	V	A	H	R	Q	L	A	G	A	I	G	Y	E	P	L	S	L	T	H	R	.	.	.	.	.	.	.	.	D	K	N	K	M	D	M	I	C	R	N	I	N	R	K	H	R	N	A	Q	F	A	G	R	A	S	I	E	Y	Y	V
Template Known Secondary structure		T	T	T	T	B	S	S					S		T	T	T	B														T	T	S	S				G	G	G	G	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		832	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.									.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.			680	.	.	.	.	.	.	.	.	.	690	.	.					.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.														.	.	.	.
Query SS confidence																																														.	.														.	.	.	.
Query Sequence		C	D	F	M	L	D	Q	V	G	N	V	F	K	G	V	I	S	S	V	T	G	F	G	F	F	V	R	L	D	D	L	F	I	D	G	L	V	H	V	S	S	L	D	N	.	.	D	Y	Y	R	F	D	Q	V	G	Q	R	L	M	.	.	.	.	G	E	S	S	G	Q	T	Y	R	L	G	D	R	V	E	V	R
Query Conservation																																														.	.														.	.	.	.
Alig confidence									.																																					.	.														.	.	.	.
Template Conservation									.
Template Sequence		G	Q	V	M	R	N	N	.	E	S	T	E	T	G	Y	V	I	K	V	F	N	N	G	I	V	V	L	V	P	K	F	G	V	E	G	L	I	R	L	D	N	L	T	E	D	P	N	S	A	A	F	D	E	V	E	Y	K	L	T	F	V	P	T	N	S	D	K	P	R	D	V	Y	V	F	D	K	V	E	V	Q
Template Known Secondary structure								T	.	T												S	S							T	T	T								G	G	G	T		S		G	G	G					T	T	T	T							T	T			S						T	T
Template Predicted Secondary structure									.
Template SS confidence
		904	.	.	.	.	.	910		.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.
		710	.	.	.		.	.	.	.	.	.	720	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	E	A	V	.	N	M	D	E	R	K	I	D	F	S	L	I
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		V	R	S	V	M	D	P	I	T	S	K	R	K	A	E	L	L
Template Known Secondary structure								S	S	S
Template Predicted Secondary structure
Template SS confidence
		983	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.