Job Description P21499 Confidence 100.00% Date Thu Jan 5 11:38:21 GMT 2012 Rank 3 Aligned Residues 628 % Identity 25% Template c2vnuD_ PDB info PDB header:hydrolase/rna Chain: D: PDB Molecule:exosome complex exonuclease rrp44; PDBTitle: crystal structure of sc rrp44 Resolution 2.30 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																											.	.																.
Query SS confidence																																											.	.																.
Query Sequence		R	R	R	L	R	A	M	E	R	D	G	Q	L	V	F	T	R	R	Q	C	Y	A	L	P	E	R	L	D	L	V	K	G	T	V	I	G	H	R	D	G	Y	.	.	G	F	L	R	V	E	G	R	K	D	D	L	Y	L	S	.	S	E	Q	M	K	T	C	I	H	G	D	Q	V	L	A	Q	P	L	G	A	D
Query Conservation																																											.	.																.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.																.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	R	V	X	G	G	L	K	N	G	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	G	N	I	Q	I	S	E	Y	N	F	L	E	G	S	V	S	L	P	R	F	S	K	P	V	L	I	V	G	Q	K	N	L	N	R	A	F	N	G	D	Q	V	I	V	E	L	L	P	Q	S
Template Known Secondary structure												T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	B	T	T							S	S	S	S	S						S					T	T			T	T										G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.																	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		133	.	.	.															.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.									.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Query Sequence		R	K	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	A	R	I	V	R	V	L	V	P	K	T	S	Q	I	V	G	R	Y	F	.	.	.	.	.	.	.	.	T	E	A	G	V	G	F	V	V	P	D	D	S	R	L	S	F	D	I	L	I	P	P	D	Q	I	M	G	A	R	M	G	F
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.																		.										.
Template Conservation																																																																		.										.
Template Sequence		E	W	K	A	P	S	S	I	V	L	D	S	E	H	F	D	I	Q	P	T	A	K	V	V	Y	I	Q	R	R	S	W	R	Q	Y	V	G	Q	L	A	P	S	S	V	D	P	Q	S	S	S	T	Q	N	V	F	V	I	L	X	D	K	C	L	P	K	.	V	R	I	R	T	R	R	A	A	.	E	L	L	D	K
Template Known Secondary structure		G		B				S	S		B		T	T	T				B		B																				G	G	G			T	T			S									S	S	T	T	S			.						T	T	G	G	.	G	G	T	T
Template Predicted Secondary structure																																																																		.										.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.		.	.	400	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.														.	.	.	.	.
Predicted Secondary structure																																																.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	V	V	E	L	T	Q	R	P	T	R	R	T	K	A	V	G	K	I	V	E	V	L	G	D	N	M	G	T	G	M	A	V	D	I	A	L	R	T	H	E	I	P	Y	I	.	W	P	Q	A	V	E	Q	Q	V	A	G	L	K	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	E	E	A
Query Conservation																																																.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	V	I	S	I	D	S	W	P	T	T	H	K	Y	P	L	G	H	F	V	R	D	L	G	T	I	E	S	A	Q	A	E	T	E	A	L	L	L	E	H	D	V	E	Y	R	P	F	S	K	K	V	L	E	C	L	P	A	E	G	H	D	W	K	A	P	T	K	L	D	D	P	E	A	V	S	K	D	P	L
Template Known Secondary structure												T	T		S	S												S	S		S											T	T				S								T	T	S		T	T	G	G	G					S	S	T	T									G	G
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	G	R	V	D	L	R	D	L	P	L	V	T	I	D	G	E	D	A	R	D	F	D	D	A	V	Y	C	E	K	K	R	G	G	G	W	R	L	W	V	A	I	A	D	V	S	Y	Y	V	R	P	S	T	P	L	D	R	E	A	R	N	R	G	T	S	V	Y	F	P	S	Q	V	I	P	M	L	P	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	K	R	K	D	L	R	D	K	L	I	C	S	I	D	P	P	G	C	V	D	I	N	D	A	L	H	A	K	K	L	P	N	G	N	W	E	V	G	V	H	I	A	D	V	T	H	F	V	K	P	G	T	A	L	D	A	E	G	A	A	R	G	T	S	V	Y	L	V	D	K	R	I	D	X	L	P	X	L
Template Known Secondary structure		G	G	G	S				T	T	S							S	S	S														T	T	S															S		T	T	S											B					S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	N	G	L	C	S	L	N	P	Q	V	D	R	L	C	M	V	C	E	M	T	V	S	S	K	G	R	L	T	G	Y	K	F	Y	E	A	V	M	S	S	H	A	R	L	T	Y	T	K	V	W	H	I	L	Q	G	D	Q	D	L	R	E	Q	Y	A	P	L	V	K	H	L	E	E	L	H	N	L	Y	K	V
Query Conservation
Alig confidence																																																														.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		L	G	T	D	L	C	S	L	K	P	Y	V	D	R	F	A	F	S	V	I	W	E	L	D	D	S	A	N	I	V	N	V	N	F	X	K	S	V	I	R	S	R	E	A	F	S	Y	E	Q	A	Q	L	R	I	D	D	K	T	Q	N	.	.	.	.	D	E	L	T	X	G	X	R	A	L	L	K	L	S	V	K
Template Known Secondary structure				T	T	T	S	S			B	T	S													T	T															B	S															T	T			.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.					.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure																									.																																							.
Query SS confidence																									.																																							.
Query Sequence		L	D	K	A	R	E	E	R	G	G	I	S	F	E	S	E	E	A	K	F	I	F	N	.	A	E	R	R	I	E	R	I	E	Q	T	Q	R	N	D	A	H	K	L	I	E	E	C	M	I	L	A	N	I	S	A	A	R	F	V	E	K	A	.	K	E	P	A	L	F	R	I	H	D	K	P	S	T	E	A	I
Query Conservation																									.																																							.
Alig confidence																									.																																							.
Template Conservation
Template Sequence		L	K	Q	K	R	L	E	A	G	A	L	N	L	A	S	P	E	V	K	V	H	X	D	S	E	T	S	D	P	N	E	V	E	I	K	K	L	L	A	T	N	S	L	V	E	E	F	X	L	L	A	N	I	S	V	A	R	K	I	Y	D	A	F	P	Q	T	A	X	L	R	R	H	A	A	P	P	S	T	N	F
Template Known Secondary structure									T	T															S	S	S	S																																					T	T	T						B					G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.				.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.							.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure																																		.	.	.																							.	.	.	.	.	.
Query SS confidence																																		.	.	.																							.	.	.	.	.	.
Query Sequence		T	S	F	R	S	V	L	A	E	L	G	L	E	L	P	G	G	N	K	P	E	P	R	D	Y	A	E	L	L	E	S	V	.	.	.	A	D	R	P	D	A	E	M	L	Q	T	M	L	L	R	S	M	K	Q	A	I	Y	.	.	.	.	.	.	D	P	E	N	R	G	H	F	G	L	A	L	Q	S	Y	A	H
Query Conservation																																		.	.	.																							.	.	.	.	.	.
Alig confidence																	.	.																.	.	.																							.	.	.	.	.	.
Template Conservation																	.	.
Template Sequence		E	I	L	N	E	X	L	N	T	R	K	N	X	S	I	.	.	S	L	E	S	S	K	A	L	A	D	S	L	D	R	C	V	D	P	E	D	P	Y	F	N	T	L	V	R	I	X	S	T	R	C	X	X	A	A	Q	Y	F	Y	S	G	A	Y	S	Y	P	D	F	R	H	Y	G	L	A	V	D	I	Y	T	H
Template Known Secondary structure													S				.	.			S											T			B	T	T	B	T	T											T	T	S								G	G	G	S		G	G	G	G		B	T	T	T	T	B	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		764	.	.	.	.	.	770	.	.	.	.	.	.	.	.			.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	S	P	I	R	R	Y	P	D	L	T	L	H	R	A	I	K	Y	L	L	A	K	E	Q	G	H	Q	G	N	T	T	E	T	G	G	Y	H	Y	S	M	E	E	M	L	Q	L	G	Q	H	C	S	M	A	E	R	R	A	D	E	A	T	R	D	V	A	D	W	L	K	C	D	F	M	L	D	Q	V	G	N
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.																																																.
Template Conservation																										.	.	.	.	.	.	.	.																																																.
Template Sequence		F	T	S	P	I	R	R	Y	C	D	V	V	A	H	R	Q	L	A	G	A	I	G	Y	E	.	.	.	.	.	.	.	.	P	L	S	L	T	H	R	D	K	N	K	X	D	X	I	C	R	N	I	N	R	K	H	R	N	A	Q	F	A	G	R	A	S	I	E	Y	Y	V	G	Q	V	X	R	N	N	E	S	.
Template Known Secondary structure			S		T	T	T	B														T	T	S	S	.	.	.	.	.	.	.	.				G	G	G	G																																					T			S	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.																																																.
Template SS confidence
		842	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.									.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680			.	.	.	.	.	.	.	.	.	690	.	.					.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
Predicted Secondary structure																																					.	.													.	.	.	.
Query SS confidence																																					.	.													.	.	.	.
Query Sequence		V	F	K	G	V	I	S	S	V	T	G	F	G	F	F	V	R	L	D	D	L	F	I	D	G	L	V	H	V	S	S	L	D	N	D	.	.	Y	Y	R	F	D	Q	V	G	Q	R	L	M	.	.	.	.	G	E	S	S	G	Q	T	Y	R	L	G	D	R	V	E	V	R	V	E	A	V	N	M	D
Query Conservation																																					.	.													.	.	.	.
Alig confidence																																					.	.													.	.	.	.
Template Conservation
Template Sequence		T	E	T	G	Y	V	I	K	V	F	N	N	G	I	V	V	L	V	P	K	F	G	V	E	G	L	I	R	L	D	N	L	T	E	D	P	N	S	A	A	F	D	E	V	E	Y	K	L	T	F	V	P	T	N	S	D	K	P	R	D	V	Y	V	F	D	K	V	E	V	Q	V	R	K	R	K	A	E
Template Known Secondary structure												T	T							T	T	T	T												S		G	G	G					T	T	T	T							T	T		S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		913	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.