Job Description P21499 Confidence 60.61% Date Thu Jan 5 11:38:21 GMT 2012 Rank 318 Aligned Residues 73 % Identity 21% Template c2ja9A_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40 Resolution 2.20 Å

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		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	G	N	V	F	K	G	V	I	S	S	V	T	G	F	G	F	F	V	R	L	D	D	L	F	I	D	G	L	V	H	V	S	S	L	D	N	D	Y	Y	R	F	D	Q	V	G	Q	R	L	M	G	E	S	S	G	Q	T	Y	R	L	G	D	R	V	E	V	R	V	E	A	V	N	M	D	E	R	K	I	D
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		S	V	N	D	F	V	I	G	V	I	I	G	T	F	S	D	S	Y	K	V	S	L	Q	N	F	S	S	S	V	S	L	S	Y	M	A	F	P	N	A	S	.	.	.	.	.	.	.	.	.	.	.	.	K	K	N	R	P	T	L	Q	V	G	D	L	V	Y	A	R	V	C	T	A	E	.	K	E	L	E	A	E
Template Known Secondary structure			T	T												S	S						S	S	T	T	S							T	T	S	S	T	T			.	.	.	.	.	.	.	.	.	.	.	.	S	S	S						T	T												.	T	T	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.													.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.
		722	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	L	I	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	C	F	D	S
Template Known Secondary structure				S	S		T
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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