Job Description P21499 Confidence 97.25% Date Thu Jan 5 11:38:21 GMT 2012 Rank 59 Aligned Residues 91 % Identity 24% Template c2a8vA_ PDB info PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex Resolution 2.40 Å

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		37	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.
Predicted Secondary structure													.	.	.																																																											.	.	.	.	.
Query SS confidence													.	.	.																																																											.	.	.	.	.
Query Sequence		R	D	E	L	A	V	E	L	H	I	E	.	.	.	G	E	E	Q	L	E	G	L	R	R	R	L	R	A	M	E	R	D	G	Q	L	V	F	T	R	R	Q	C	Y	A	L	P	E	R	L	D	L	V	K	G	T	V	I	G	H	R	D	G	Y	G	F	L	R	V	E	G	R	K	.	.	.	.	.	D	D	L
Query Conservation													.	.	.																																																											.	.	.	.	.
Alig confidence													.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	T	L	G	E	N	M	G	L	E	N	L	A	R	M	R	K	Q	D	I	I	F	A	I	L	K	Q	H	A	K	S	G	E	D	I	F	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	L	E	I	L	Q	D	G	F	G	F	L	R	S	A	D	S	S	Y	L	A	G	P	D	D	I
Template Known Secondary structure								T	T	T				G	G	G	S																T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S							T	T	T	T	T	S			T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.															.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		Y	L	S	S	E	Q	M	K	T	.	.	C	I	H	G	D	Q	V	L	A	Q	P	L	G	A	D	R	K	G	R	R	E	A	R	I
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		Y	V	S	P	S	Q	I	R	R	F	N	L	R	T	G	D	T	I	S	G	K	I	R	P	P	K	E	G	E	R	Y	F	A	L	L
Template Known Secondary structure												T			T	T												T	T			S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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