Job Description P30745 Confidence 99.68% Date Thu Jan 5 11:46:21 GMT 2012 Rank 9 Aligned Residues 201 % Identity 17% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.											.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.		80	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.										.									.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.										.									.
Query Sequence		Y	L	R	L	S	I	T	D	V	C	N	F	R	C	T	Y	C	L	P	D	G	Y	K	P	S	G	V	T	N	K	G	F	L	T	V	D	E	I	R	R	V	T	R	A	F	A	R	L	.	.	.	.	.	.	.	.	.	.	G	T	E	K	V	R	L	T	G	.	G	E	P	S	L	R	R	D	.	F	T	D
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.										.									.
Alig confidence																													.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.										.									.
Template Conservation																													.	.	.	.	.
Template Sequence		T	L	C	V	S	S	Q	V	G	C	A	L	E	C	K	F	C	S	T	A	Q	Q	G	F	N	R	N	.	.	.	.	.	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M	G	M	G	E	P	L	L	N	L	N	N	V	V	P
Template Known Secondary structure												S	S			T	T		G	G	G	T	T						.	.	.	.	.																								S	S		S		S						S	S	S		G	G	G
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																																							.	.	.
Query SS confidence																	.	.																																							.	.	.
Query Sequence		I	I	A	A	V	R	E	N	D	A	I	R	Q	I	A	.	.	V	T	T	N	G	Y	R	L	E	R	D	V	A	S	W	R	D	A	G	L	T	G	I	N	V	S	V	D	S	L	D	A	R	Q	F	H	A	I	.	.	.	T	G	Q	D	K	F	N	Q	V	M	A	G	I	D	A	A	F	E	A	G	F	E
Query Conservation																	.	.																																							.	.	.
Alig confidence																	.	.																																							.	.	.
Template Conservation
Template Sequence		A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	D	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K	Y	N	I	E	T	F	L	A	A	V	R	R	Y	L	E	K	S	N	A
Template Known Secondary structure								S	T	T	T	T				G	G	G						S																								S	S								S	G	G	G	G	T	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
					158	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure		.	.	.														.	.
Query SS confidence		.	.	.														.	.
Query Sequence		.	.	.	K	V	K	V	N	T	V	L	M	R	D	V	N	.	.	H	H	Q	L	D	T	F	L	N	W	I	Q	H	R	P	I	Q	L	R	F	I	E	L	M	E	T	G	E	G	S	E	L	F	R	K	H	H	I	S	G	Q	V	L	R	D	E	L	L	R	R	G
Query Conservation		.	.	.														.	.
Alig confidence		.	.	.														.	.																										.
Template Conservation																																													.
Template Sequence		N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	K	I	N	L	I	P	W	N	P	.	F	P	G	A	P	Y	G	R	S	S	N	S	R	I	D	R	F	S	K	V	L	M	S	Y	G
Template Known Secondary structure		T	T	T									B	T	T	T	T		S											T	T	T	S												.		T	T					B																T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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