Job Description P30745 Confidence 99.08% Date Thu Jan 5 11:46:21 GMT 2012 Rank 13 Aligned Residues 190 % Identity 9% Template c2qgqF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 Resolution 2.00 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.
Predicted Secondary structure																																																		.	.	.	.	.	.	.																							.	.
Query SS confidence																																																		.	.	.	.	.	.	.																							.	.
Query Sequence		C	T	Y	C	L	P	D	G	Y	K	P	S	G	V	T	N	K	G	F	L	T	V	D	E	I	R	R	V	T	R	A	F	A	R	L	G	T	E	K	V	R	L	T	G	G	E	P	S	.	.	.	.	.	.	.	L	R	R	D	F	T	D	I	I	A	A	V	R	E	N	D	A	I	R	Q	I	A	.	.	V
Query Conservation																																																		.	.	.	.	.	.	.																							.	.
Alig confidence													.	.	.	.																																		.	.	.	.	.	.	.																							.	.
Template Conservation													.	.	.	.
Template Sequence		R	P	Y	A	Y	V	K	I	S	D	G	.	.	.	.	S	L	R	S	R	S	I	E	D	I	T	R	E	V	E	D	L	L	K	E	G	K	K	E	I	I	L	V	A	Q	D	T	T	S	Y	G	I	D	L	Y	R	K	Q	A	L	P	D	L	L	R	R	L	N	S	L	N	G	E	F	W	I	R	V	X	Y
Template Known Secondary structure			S							B			.	.	.	.				B																T	T									S		G	G	G	T	T	T	T	T	T	S	S												T	S	S	S	S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																				.	.																																							.	.
Query SS confidence																				.	.																																							.	.
Query Sequence		T	T	N	G	Y	R	L	E	R	D	V	A	S	W	R	D	A	G	.	.	L	T	G	I	N	V	S	V	D	S	L	D	A	R	Q	F	H	A	I	T	G	Q	D	K	F	N	Q	V	M	A	G	I	D	A	A	F	E	A	.	.	G	F	E	K	V	K	V	N	T	V	L	M	R	D	V	N	H	H	Q	L
Query Conservation																				.	.																																							.	.
Alig confidence																				.	.																																							.	.
Template Conservation
Template Sequence		L	H	P	D	H	L	T	E	E	I	I	S	A	X	L	E	L	D	K	V	V	K	Y	F	D	V	P	V	Q	H	G	S	D	K	I	L	K	L	X	G	R	T	K	S	S	E	E	L	K	K	X	L	S	S	I	R	E	R	F	P	D	A	V	L	R	T	S	I	I	V	G	F	P	G	E	T	E	E	D	F
Template Known Secondary structure				G	G	G													T	T	B		S							B		S									T			S																	T	T										S		T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	F	L	N	W	I	Q	H	R	P	I	Q	L	R	F	I	E	L	M	E	T	G	E	G	S	E	L	F	R	K	H	H	I	S	G	Q	V	L	R	D	E	L	L	R	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	L	K	Q	F	V	E	E	I	Q	F	D	K	L	G	A	F	V	Y	S	D	K	V	D	P	E	X	A	K	R	R	Q	E	E	L	L	L	L	Q	A	E	I	S	N	S	R
Template Known Secondary structure														S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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