Return to main results Retrieve Phyre Job Id

Job DescriptionP30745
Confidence92.71%DateThu Jan 5 11:46:21 GMT 2012
Rank17Aligned Residues149
% Identity13%Templatec2ftpA_
PDB info PDB header:lyaseChain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.........80.........90.........100.........110.........120..
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  NKGFLTVDEIRRVTRAFARLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLERDVASWRDAGLTGINV
Query Conservation      
  
     
      
       



                        
    
               
 
Alig confidence 















































































Template Conservation           
  
   
  


  



            
                  
      
  
   
   
  
Template Sequence  EKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEVAV
Template Known Secondary structure  SSS


TT
S
S
TTT
GGGTTS


TTS

STT

Template Predicted Secondary structure 




























Template SS confidence 















































































   21........30.........40.........50.........60.........70.........80.........90.........100
 
   123......130.........140 .........150.........160........ .170.........180.........190..
Predicted Secondary structure 









..





......





Query SS confidence 

















. .



























. . . . . .























Query Sequence  SVDSLDARQFHAITGQDK. . FNQVMAGIDAAFEAGFEKVKVNTVLMRD. . . . . . VNHHQLDTFLNWIQHRPIQLRFIE
Query Conservation 
 
               ..   
   
  
   
   
 
  
    ...... 
   
  
       
       
Alig confidence 

















..















.










......























Template Conservation      

         
           
  

  
 . 
                               
 
 
 
 
Template Sequence  FAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQV. RVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLG
Template Known Secondary structure  S
SS
TT
.
TT
BTTTB


TT
S
Template Predicted Secondary structure 








.













Template SS confidence 













































































   101........110.........120.........130...... ...140.........150.........160.........170.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions