Phyre 2 alignment of P0A8N3 with c3racA

Job Description P0A8N3
Confidence 99.93% Date Thu Jan 5 11:08:14 GMT 2012

Rank 34 Aligned Residues 273

% Identity 12% Template c3racA_

PDB info PDB header:ligase Chain: A: PDB Molecule:histidine-trna ligase; PDBTitle: crystal strucutre of histidine--trna ligase subunit from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446.

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																.	.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.																								.	.	.	.	.	.
Query Sequence	F	K	V	R	S	Q	I	L	S	G	I	R	Q	F	M	V	N	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	.	.	.	.	.	.	P	G	G	A	A	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	.	.	.	.	.	.	I	A	P	E	L	Y	L	K	R	L	V	V	G	G
Query Conservation																																.	.	.	.	.	.																								.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence	A	K	R	R	R	A	V	E	T	R	L	L	S	F	V	E	D	A	G	Y	E	P	V	T	S	G	L	F	E	Y	V	D	T	L	L	R	A	R	S	P	E	S	S	R	D	W	I	R	L	F	D	G	G	G	D	A	V	A	L	R	P	E	M	T	P	S	I	A	R	M	A	A	P	R	V	A	A	G	R	T
Template Known Secondary structure																		T	T								S									T	T	S		T	T	S						B					S	S	S						S	S	S														T	T
Template Predicted Secondary structure
Template SS confidence
	34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.

	252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	E	R	V	F	E	I	N	R	N	F	R	N	E	G	I	S	V	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	D	Y	K	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	D	I	L	G	K	T	E	V	T	Y	G	D	V	T	L	D	F	G	K	P	F	E	K	L	T	M	R	E
Query Conservation
Alig confidence															.	.	.	.	.	.																		.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.																		.	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence	P	I	R	W	C	Y	C	E	R	V	Y	R	R	T	.	.	.	.	.	.	A	A	E	S	T	Q	V	G	I	E	R	I	G	E	E	A	S	.	.	V	D	V	D	M	D	V	L	R	L	L	H	E	A	S	A	A	.	.	.	.	.	.	.	.	.	.	A	G	V	R	H	H	R	I	V	V	S	H	A	R
Template Known Secondary structure															.	.	.	.	.	.													S	S				.	.																		.	.	.	.	.	.	.	.	.	.		T			S								T	T
Template Predicted Secondary structure															.	.	.	.	.	.																		.	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
	114	.	.	.	.	.	120	.	.	.	.	.	.	.							.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.											.	.	.	.	.	.	.	.	170	.	.	.	.	.

	332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	S	A	K	A	I	A	E	S	I	G	I	H	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	E	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	A	R	R	N	D	V	N	P	E	I	T
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.
Template Sequence	L	V	P	R	L	L	D	A	L	G	I	S	A	S	L	S	R	A	F	L	A	C	L	T	S	G	N	.	.	.	.	.	.	.	.	.	Y	V	Q	F	R	E	L	W	Q	L	H	A	A	K	D	V	D	L	L	A	N	L	L	T	W	S	P	A	E	R	D	A	A	K	R	S	R	E	A	S	D	R	E	L
Template Known Secondary structure									T	T																T		.	.	.	.	.	.	.	.	.													S			S									B				S	S		T	T	S	B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.
Template SS confidence
	188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.										.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

	412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	D	R	F	E	F	F	I	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	Q	R	F	L	D	Q	V	A	A	K	D	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																														.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.																														.
Template Sequence	E	A	.	.	.	L	L	R	D	A	V	D	P	R	A	A	A	D	V	R	D	A	W	R	Y	L	C	R	L	A	E	A	L	H	.	D	S	G	L	A	S	D	V	V	T	F	D	L	A	L	H	R	E	L	D	Y	Y	T	G	L	V	F	E	M	F	A	P	G	V	G	A	P	I	A	Q	G	G	R	Y	D
Template Known Secondary structure			.	.	.			T	T		S																								.			T			T	T	T					T	T				S		T	T			S								T	T		S	S		S							T
Template Predicted Secondary structure			.	.	.																														.
Template SS confidence
	259	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

							468	.	470		.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.				.
Query SS confidence	.	.	.	.	.	.				.
Query Sequence	.	.	.	.	.	.	G	L	P	.	P	T	A	G	L	G	I	G	I	D	R	M	V	M	L	F	T
Query Conservation	.	.	.	.	.	.				.
Alig confidence	.	.	.	.	.	.				.
Template Conservation
Template Sequence	E	L	L	A	Q	F	G	A	G	A	P	A	V	G	F	A	F	E	V	E	R	V	M	A	V	L	E
Template Known Secondary structure	T	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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