Job Description P0A8N3 Confidence 100.00% Date Thu Jan 5 11:08:14 GMT 2012 Rank 11 Aligned Residues 442 % Identity 22% Template c3i7fA_ PDB info PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica Resolution 2.80 Å

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		32	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		Q	G	I	A	F	P	N	D	.	F	R	R	D	H	T	S	D	Q	L	H	A	E	F	D	G	K	E	N	E	E	L	E	A	L	N	I	E	V	A	V	A	G	R	M	M	T	R	R	I	M	G	K	A	S	F	V	T	L	Q	D	V	G	G	R	I	Q	L	Y	V	A	R	D	D	L	P	E	G	V	Y	N
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		S	G	E	N	F	K	V	M	P	M	H	Q	S	Q	P	C	Y	K	T	G	L	K	Y	T	E	I	E	E	L	V	P	A	M	A	E	K	T	V	T	I	R	A	R	V	Q	A	V	R	G	K	G	N	M	V	F	L	F	L	R	K	G	I	Y	T	C	Q	A	L	V	M	K	S	E	T	I	S	K	E	F	V
Template Known Secondary structure				S	S								S	S		G	G	G						B			G	G	G		S	G	G	G	T	T																S	S									T	T										S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.
Query Sequence		E	Q	F	K	K	W	D	L	G	D	I	L	G	A	K	G	K	L	F	K	T	K	T	.	.	.	.	.	.	.	G	E	L	S	I	H	C	T	E	L	R	L	L	T	K	A	L	R	P	L	P	D	K	F	H	G	L	Q	D	Q	E	A	R	Y	R	Q	R	Y	L	D	L	I	S	N	D	E	S	R	N	T
Query Conservation																									.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	C	Q	K	I	S	A	E	S	I	C	D	I	T	G	I	V	K	A	V	E	K	P	I	E	K	A	T	Q	Q	D	V	E	I	H	V	T	S	I	A	V	V	S	L	A	E	Y	P	L	P	M	Q	I	E	D	L	T	F	P	S	S	V	F	K	K	Q	E	E	D	I	A	K	V	K	A	S	A	Q	K
Template Known Secondary structure						T			T	T													S	S			T	T	S	S	S		S																B	S		S	S		S	G	G	G	S													T	T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		F	K	V	R	S	Q	I	L	S	G	I	R	Q	F	M	V	N	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	P	G	G	A	A	A	R	P	F	I	.	.	.	.	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F	E	R	V	F	E	I	N
Query Conservation																																											.	.	.	.
Alig confidence																																											.	.	.	.
Template Conservation
Template Sequence		Y	V	K	V	S	Q	D	T	R	L	D	N	R	M	L	D	L	R	T	V	T	N	I	A	I	F	R	I	Q	S	A	C	C	G	L	F	R	E	F	L	T	S	Q	K	F	V	E	I	H	T	P	K	L	I	A	Y	L	A	Q	S	P	Q	L	Y	K	Q	M	A	I	M	G	D	F	R	K	V	F	E	V	G
Template Known Secondary structure												T	T					T	T	S																								T	T								S	B				B		S		T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.							.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure												.																	.																																					.	.	.	.	.	.
Query SS confidence												.																	.																																					.	.	.	.	.	.
Query Sequence		R	N	F	R	N	E	G	I	S	V	.	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	.	D	Y	K	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	D	I	L	G	K	T	E	V	T	Y	G	D	V	T	L	D	F	G	.	.	.	.	.	.	K	P	F	E	K	L	T	M	R	E
Query Conservation												.																	.																																					.	.	.	.	.	.
Alig confidence												.																	.																																					.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	F	R	A	E	N	S	N	T	R	R	H	L	T	E	F	E	G	L	D	I	E	M	E	I	V	E	N	Y	H	E	C	I	D	V	M	E	K	L	F	T	F	I	F	D	E	I	P	K	R	F	P	D	E	L	K	V	I	R	K	Q	Y	P	F	E	D	L	I	Y	R	P	F	L	R	L	T	Y	K	E
Template Known Secondary structure							S				S	S	S			S												S	S		T																																	S									S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.																.
Query SS confidence																																																									.																.
Query Sequence		A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	S	A	K	A	I	A	E	S	I	G	I	H	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	E	E	V	A	E	A	H	L	I	Q	.	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	A	.	R	R	N	D	V	N	P	E
Query Conservation																																																									.																.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.																.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	R	A	S	G	E	T	I	G	D	Y	D	D	F	T	T	P	Q	E	V	K	L	G	E	L	I	K	A	K	Y	N	T	D	F	Y	I	L	D	K	F	P	A	A	I	R	P	F	Y	T	M	P	D	I	D	D	P	N
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T					T	T																						S								B	G	G	G	S		T	T	B		B		S	S		T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		394	.	.																				.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	D	R	F	E	F	F	I	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	Q	R	F	L	D	Q	V	A	A	K	D	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	H	G	L	P	P	T	A	G	L	G	I	G	I	D	R	M	V	M	L	F	T	N	S
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.
Template Sequence		Y	S	N	S	Y	D	V	F	V	R	G	Q	E	I	T	S	G	A	Q	R	I	H	D	P	E	F	L	M	K	R	C	I	E	K	G	V	D	P	A	T	.	.	.	.	.	.	.	.	L	K	D	Y	I	E	S	F	R	F	G	S	W	P	H	A	G	C	G	I	G	L	E	R	I	T	M	L	Y	L	G	I
Template Known Secondary structure		B	B	S							T	T																							T	T			G	G	G	.	.	.	.	.	.	.	.	G						T	T	S	S																				T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.									.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	I	R	D	V	I	L	F	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	N	I	R	K	V	T	L	F	P	R
Template Known Secondary structure		S		G	G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		527	.	.	530	.	.	.	.	.	.	.