Job Description P0A8N3 Confidence 99.09% Date Thu Jan 5 11:08:14 GMT 2012 Rank 59 Aligned Residues 216 % Identity 20% Template c1wleB_ PDB info PDB header:ligase Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate Resolution 1.65 Å

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		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																.	.	.	.				.	.	.	.																																					.	.	.
Query SS confidence																																.	.	.	.				.	.	.	.																																					.	.	.
Query Sequence		K	V	R	S	Q	I	L	S	G	I	R	Q	F	M	V	N	R	G	F	M	E	V	E	T	P	M	M	Q	V	I	.	.	.	.	P	G	G	.	.	.	.	A	A	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L	V	V	G	G	F	E	.	.	.
Query Conservation																																.	.	.	.				.	.	.	.																																					.	.	.
Alig confidence																																.	.	.	.				.	.	.	.																																					.	.	.
Template Conservation
Template Sequence		L	L	Q	H	G	L	V	N	F	T	L	N	K	L	I	H	R	G	F	T	P	M	T	V	P	D	L	L	R	G	V	V	F	E	G	C	G	M	T	P	N	A	K	P	S	Q	I	Y	N	I	D	P	S	R	F	E	D	L	N	L	A	G	T	A	E	V	G	L	A	G	Y	F	M	D	H	S	V	A	F	R
Template Known Secondary structure																		T	T								S											T			T	T	S	S	S		S	S		B			T	T	T	S	S	S					S	S										T	T					G	G
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
						254	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure		.	.	.	.													.	.	.	.					.	.																	.
Query SS confidence		.	.	.	.													.	.	.	.					.	.																	.
Query Sequence		.	.	.	.	R	V	F	E	I	N	R	N	F	R	N	E	.	.	.	.	G	I	S	V	.	.	R	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	.	D	Y	K	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	D	I	L	G	K	T	E	V	T	Y	G	D	V	T	L	D	F	G	K
Query Conservation		.	.	.	.													.	.	.	.					.	.																	.
Alig confidence		.	.	.	.													.	.	.	.					.	.																	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	P	I	R	M	V	C	S	S	T	C	Y	R	A	E	T	D	T	G	K	E	P	W	G	L	Y	R	V	H	H	F	T	K	V	E	M	F	G	V	T	G	P	G	L	E	Q	S	S	E	L	L	E	E	F	L	S	L	Q	M	E	I	L	T	E	.	.	.	.	.	.	.	.	.	.	.	.	L	G	L
Template Known Secondary structure		G		S															S	S					S	S	S	T	T		S													S	S																						.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.													.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	E	K	L	T	M	R	E	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	S	A	K	A	I	A	E	S	I	G	I	H	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	E	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	A	R
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	F	R	V	L	D	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		368	.	370	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.							.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.		.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																																																							.
Query SS confidence																		.	.	.	.	.	.																																																							.
Query Sequence		R	N	D	V	N	P	E	I	T	D	R	F	E	F	F	I	.	.	.	.	.	.	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	Q	R	F	L	D	Q	V	A	A	K	D	A	G	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	H	G	L	P	P	T	.	A	G	L
Query Conservation																		.	.	.	.	.	.																																																							.
Alig confidence																		.	.	.	.	.	.											.					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																																		.					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	E	L	G	L	P	A	Y	R	K	F	D	I	E	A	W	M	P	G	R	G	R	F	G	E	V	T	S	A	S	N	.	C	T	D	F	.	.	Q	S	R	R	L	H	I	M	F	Q	T	E	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	Q	F	A	H	T	V	N	A	T
Template Known Secondary structure		G	G	G	S	T	T	T		S										T	T	T	T											.		T	T		.	.						T						T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.																	.	.	.	.	430	.	.	.	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500		.	.	.
Predicted Secondary structure																						.						.
Query SS confidence																						.						.
Query Sequence		G	I	G	I	D	R	M	V	M	L	F	T	N	S	H	T	I	R	D	V	.	I	L	F	P	A	.	M	R	P
Query Conservation																						.						.
Alig confidence																						.						.
Template Conservation
Template Sequence		G	C	A	V	P	R	L	L	I	A	L	L	E	S	Y	Q	Q	K	D	G	S	V	L	V	P	P	A	L	Q	P
Template Known Secondary structure																	B		T	T	S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions