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Job DescriptionP0A8N3
Confidence100.00%DateThu Jan 5 11:08:14 GMT 2012
Rank5Aligned Residues428
% Identity28%Templatec1eqrC_
PDB info PDB header:ligaseChain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90.........100.........110.........120.
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Query Sequence  RDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDI
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Template Sequence  RTEYCGQLRL. . . . . . . . . . SHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRAD. . . ALKLASELRNEFC
Template Known Secondary structure 
SS
GGG

G..........GGTT

STT
TT
SS
SS...TT

TT
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   2.......10. ........20.........30.........40.........50..... ....60........
 
   122....... 130.........140.........150.........160.........170.........180.........190..
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Query Sequence  LGAKGKLF. . . . . . . . . KTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILS
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Template Sequence  IQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA. DVLPLDSNHVNTEEARLKYRYLDL. RRPEMAQRLKTRAKITS
Template Known Secondary structure 

GGG

TTSTTTT

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SS
TTS


TT.TS
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   6970.........80.........90.........100..... ....110.........120......... 130.........140......
 
   193......200.........210.........220.........230..... ....240.........250.........260.........270.
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Query Sequence  GIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMY. LRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRH
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Template Sequence  LVRRFMDDHGFLDIETPMLTKATPEG. ARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADR
Template Known Secondary structure  TT




SSB



SS.S



SSSTT


S
STT



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TT
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   147..150.........160.........170.. .......180.........190.........200.........210.........220.....
 
   272.......280.........290.........300.........310.........320.........330.........340.
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Query Sequence  NPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETD. . . . . . . . . .
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Template Sequence  QPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLG. . . . . . . . . . . DFPVMTFAEAERRYGSDKPDLRNPMELTD
Template Known Secondary structure 
SS

TT




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TTS


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   226...230.........240.........250.........260..... ....270.........280.........290....
 
   342......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MADLDNF
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Template Sequence  VADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNA
Template Known Secondary structure 
SS
S

TTTTGGG

TTT
S

SSGGG
TTT
TTGGGS
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   295....300.........310.........320.........330.........340.........350.........360.........370....
 
   349350.........360.... .....370.........380.........390....
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Query Sequence  DSAKAIAESIGIHVEK. . . . . . . . . . . . . . SWGLGRIVTEIFEEVAEAHLIQPTFITEYP. . . . . . . . . . . . . . . . . . . .
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Template Sequence  EIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSP
Template Known Secondary structure  TT

TT
TT
S
TTS



BS
SSSSSS
TTB
B
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   375....380.........390.........400.........410.........420.........430.........440.........450....
 
   395....400.........410.........420.........430.........440.........450.........460.........470....
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Query Sequence  AEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAG
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Template Sequence  KDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEE. . . . EQREKFGFLLDALKYGTPPHAG
Template Known Secondary structure  SS



TT
BBSTTB


TT

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   455....460.........470.........480.........490.........500........ .510.........520.........530
 
   475....480.........490.........500
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Query Sequence  LGIGIDRMVMLFTNSHTIRDVILFPA
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Template Sequence  LAFGLDRLTMLLTGTDNIRDVIAFPK
Template Known Secondary structure  TT
S
GGGGSSS

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   531........540.........550......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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