Return to main results Retrieve Phyre Job Id

Job DescriptionP46837
Confidence99.47%DateThu Jan 5 12:04:18 GMT 2012
Rank23Aligned Residues75
% Identity20%Templated2je6i1
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
Resolution1.6

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   649650.........660.........670.........680.........690. ........700.........710.........720....
Predicted Secondary structure 





















...













Query SS confidence 










































. . .
































Query Sequence  QPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDP. . . HTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQ
Query Conservation    
  
 
 
 


 







   




 
 


  
  
...   
 


 
 
 
  

  
 

 

 
  
 
Alig confidence 










































...




















.










Template Conservation 
 



 
 
  
   
  
 
     
 
  
                   

 
 
 
  

   . 
 



   
Template Sequence  KINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSI. DPVLSVKGKDL
Template Known Secondary structure 
TT

SS
SSSS
TS


TT


SSS

TT
TT.

STT
Template Predicted Secondary structure 

































.




Template SS confidence 














































































   71........80.........90.........100.........110.........120.........130....... ..140........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions