 |
Job Description | P46837 | Confidence | 99.48% | Date | Thu Jan 5 12:04:18 GMT 2012 |
Rank | 21 | Aligned Residues | 77 |
% Identity | 25% | Template | d2ba0a1 |
SCOP info | OB-fold
| Nucleic acid-binding proteins
| Cold shock DNA-binding domain-like
|
Resolution | 2.70 |
|
 |
  |   |
649 | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | |
690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
| . |
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | P | G | M | I | L | E | G | A | V | T | N | V | T | N | F | G | A | F | V | D | I | G | V | H | Q | D | G | L | V | H | I | S | S | L | S | N | K | F | V | E | . |
D | P | H | T | V | V | K | A | G | D | I | V | K | V | K | V | L | E | V | D | L | Q | R | K | R | I | A | L | T | M | R | L | D | E | Q | P | G |
Query Conservation |   |
  |   |
|   |   |
|   |
|   |
|   |
|
|
|   |
|
|
|
|
|
|
|
|   |   |   |
|
|
|
|
|   |
|   |
|
|
|   |   |
|   | . |   |
|   |   |   |
|   |
|
|
|   |
|   |
|   |
|   |   |
|
|   |   |
|   |
|
|   |
|
|   |
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|   |
|   |
|   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |   |   |
|   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |
|
| . |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |
Template Sequence |   |
S | V | G | D | V | V | I | G | I | I | R | E | V | A | A | N | G | W | A | V | D | I | Y | S | P | Y | Q | A | F | L | P | V | S | E | N | P | E | M | K | P | N | K | K | P | N | E | V | L | D | I | G | D | A | I | I | A | K | V | L | N | I | D | . |
P | K | M | K | V | T | L | T | M | K | D | R | I | C | R | P |
Template Known Secondary structure |   |
| T | T |
|  |  |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |
| S | S | S | S |
|  |  |  |  | G | G | G |
| T | T |
|
| T | T | S |
| G | G | G | T |
|
| T | T |
|  |  |  |  |  |  |  |  |  |
| . | T | T |
|
|  |  |  |  |
|
| S | S | S |
|  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | |
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|