Return to main results Retrieve Phyre Job Id

Job DescriptionP46837
Confidence99.54%DateThu Jan 5 12:04:18 GMT 2012
Rank17Aligned Residues88
% Identity20%Templated1wi5a_
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   643......650.........660.........670. ........680....... ..690.........700.........710.........720
Predicted Secondary structure 











.









.












Query SS confidence 




























.















.
































Query Sequence  ETMNDLQPGMILEGAVTNVTNFGAFVDIG. VHQDGLVHISSLSNKF. VEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR
Query Conservation    
 

  
  
 
 
 


 







.   




 
 


  .
  
   
 


 
 
 
  

  
 

 

 
Alig confidence 




























.















.
































Template Conservation 

   
  
  
 
 
  
 
 
  
 

     



  
 
           
 


 
   

 

     
 

 
Template Sequence  LSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVG
Template Known Secondary structure 

TTT

TT

SS


SS
SSS



TT


TTS


Template Predicted Secondary structure 































Template SS confidence 















































































   192.......200.........210.........220.........230.........240.........250.........260.........270.
 
   721........730
Predicted Secondary structure 









Query SS confidence 









Query Sequence  LDEQPGETNA
Query Conservation    
       
Alig confidence 









Template Conservation   
    
 
 
Template Sequence  HSEVSTAIAT
Template Known Secondary structure 


S





Template Predicted Secondary structure 
Template SS confidence 









   272.......280.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions