Job Description P46837 Confidence 43.25% Date Thu Jan 5 12:04:18 GMT 2012 Rank 230 Aligned Residues 89 % Identity 10% Template c2zkqm_ PDB info PDB header:ribosomal protein/rna Chain: M: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		495	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.					.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.																																		.	.	.	.
Query SS confidence						.	.																																		.	.	.	.
Query Sequence		G	V	D	L	.	.	N	T	A	S	V	P	L	L	T	R	V	A	G	L	T	R	M	M	A	Q	N	I	V	A	W	R	D	E	N	G	Q	F	Q	.	.	.	.	N	R	Q	Q	L	L	K	V	S	R	L	G	P	K	A	F	E	Q	C	A	G	F	L	R	I	N	H	G	D	N	P	L	D	A	S	T	V
Query Conservation						.	.																																		.	.	.	.
Alig confidence						.	.																																		.	.	.	.
Template Conservation
Template Sequence		N	T	N	I	D	G	R	R	K	I	A	F	A	I	T	A	I	K	G	V	G	R	R	Y	A	H	V	V	L	R	K	A	D	I	D	L	T	K	R	A	G	E	L	T	E	D	E	V	E	R	V	I	T	I	M	Q	N	P	R	Q	Y	K	I	P	D	W	F	L	N	R	Q	K	D	V	K	D	G	K	Y	S
Template Known Secondary structure		T	T					S	S	B					G	G	G	S	T	T														T			T	T	S	B	T	T	T	S														T	T		S			S				S	S		S	S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	E	A	Y	P	V	V	E	R	I	L	A	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	L	A	N	G	L	D	N	K	L	R	E	D	L
Template Known Secondary structure				S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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