 |
Job Description | P46837 | Confidence | 28.30% | Date | Thu Jan 5 12:04:18 GMT 2012 |
Rank | 265 | Aligned Residues | 42 |
% Identity | 26% | Template | c2rf4B_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa4; |
PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43
|
Resolution | 3.10 Å |
|
  |   |
467 | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | |
. | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | . |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Query Sequence |   |
V | G | Q | Y | Q | H | D | V | S | Q | T | Q | L | A | R | K | L | D | A | V | V | E | D | C | V | N | A | V | G | V | D | L | N | T | A | S | V | . |
P | L | L | T | R | V |
Query Conservation |   |
|
|   |
|
|
|
|
|   |   |   |   |
|   |   |   |
|
|   |
|
|   |   |   |
|
|   |
|
|
|
|
|
|   |
|
|   | . |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|
| . |
|
|
|
|   |   |
|   |
|
|   |   |
|
|   |
|
|
|   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
Template Sequence |   |
T | Q | L | P | Q | H | . |
V | S | T | D | E | V | L | Q | F | L | E | S | F | I | D | E | K | E | N | I | I | D | I | D | T | N | L | S | S | S | I | S | Q | L | K | R | I |
Template Known Secondary structure |   |
S | S |
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S |
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
25 | . | . | . | . | 30 | |
. | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|