Return to main results Retrieve Phyre Job Id

Job DescriptionP46837
Confidence96.48%DateThu Jan 5 12:04:18 GMT 2012
Rank75Aligned Residues70
% Identity11%Templatec2rf4A_
PDB info PDB header:transferaseChain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   649650.........660.........670.........680.........690. ........700.........710.......
Predicted Secondary structure 





















...........








Query SS confidence 










































. . . . . . . . . . .

























Query Sequence  QPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDP. . . . . . . . . . . HTVVKAGDIVKVKVLEVDLQRKRIAL
Query Conservation    
  
 
 
 


 







   




 
 


  
  
...........   
 


 
 
 
  

  
 

 
Alig confidence 










































...........

























Template Conservation    



 
 
       
   
 
 


 
    

    
                  

  


 
  
        
Template Sequence  QVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNSLGHWVDSNGEPIDGKLRFTVRNVHTTGRVVSV
Template Known Secondary structure 
TT




SS
TTT
STTS
SS
B



S






B
SS

B

S

SSS
Template Predicted Secondary structure 






























Template SS confidence 















































































   128.130.........140.........150.........160.........170.........180.........190.........200.......
 
   718
Predicted Secondary structure 
Query SS confidence 
Query Sequence  T
Query Conservation 
Alig confidence 
Template Conservation   
Template Sequence  D
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   246
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions