Job Description P60872 Confidence 99.13% Date Thu Jan 5 12:07:13 GMT 2012 Rank 4 Aligned Residues 82 % Identity 26% Template c3jxoB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

276

.

.

.

280

.

.

.

.

.

.

.

.

.

290

.

.

.

.

.

.

.

.

.

300

.

.

.

.

.

.

.

.

.

310

.

.

.

.

.

.

.

.

.

320

.

.

.

.

.

.

.

.

.

330

.

.

.

.

.

.

.

.

.

340

.

.

.

.

.

.

.

.

.

350

.

.

.

.

.

Predicted Secondary structure

Query SS confidence

Query Sequence

Q

E

V

D

T

S

L

S

T

K

G

T

D

L

R

V

E

R

V

V

V

T

N

E

N

V

L

G

K

R

I

R

D

L

H

F

K

E

R

Y

D

V

V

I

S

R

L

N

R

A

G

V

E

L

V

A

S

G

D

I

S

L

Q

F

G

D

I

L

N

L

V

G

R

P

S

A

I

D

A

V

Query Conservation

Alig confidence

.

.

Template Conservation

.

.

Template Sequence

L

Y

F

Q

G

M

I

P

L

E

Q

G

I

E

F

L

S

V

N

V

E

E

D

S

P

V

V

G

K

K

L

K

D

L

P

L

P

R

.

.

D

S

I

I

A

A

I

V

R

G

G

V

L

V

V

P

R

G

D

T

E

I

L

S

G

D

K

L

Y

V

I

V

S

A

E

A

K

E

T

V

Template Known Secondary structure

S

T

T

T

T

T

T

T

T

B

G

G

G

T

.

.

T

T

T

T

T

B

T

T

T

T

T

Template Predicted Secondary structure

.

.

Template SS confidence

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions