Return to main results Retrieve Phyre Job Id

Job DescriptionP60872
Confidence58.47%DateThu Jan 5 12:07:13 GMT 2012
Rank17Aligned Residues103
% Identity9%Templatec2zc3F_
PDB info PDB header:biosynthetic proteinChain: F: PDB Molecule:penicillin-binding protein 2x; PDBTitle: penicillin-binding protein 2x (pbp 2x) acyl-enzyme complex2 (biapenem) from streptococcus pneumoniae
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   214.....220.... .....230.........240..... ....250.........260.........270.........280.........290
Predicted Secondary structure 






.








..
























Query SS confidence 










.




















. .












































Query Sequence  PNLHDLAIKDV. PILNGDKIICSRLKREETLKV. . PSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLR
Query Conservation 
 





 
 .         
  
 
      ..      
  

 
 
 
    
  
    
               
Alig confidence 










.




















..



















.........................
Template Conservation 


 
     
   
   

 
        

 
 
  
  
  
  
 
  
  .........................
Template Sequence  PSVKDISPGDLAEELRRNLVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKA. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


SSS
TT
SS
SSSS
TT
B

TT
S

.........................
Template Predicted Secondary structure 

























.........................
Template SS confidence 















































































   639640.........650.........660.........670.........680.........690...
 
   291........300........ .310.........320.........330 .........340......
Predicted Secondary structure 









.











..








Query SS confidence 

















.





















. .















Query Sequence  VERVVVTNENVLGKRIRD. LHFKERYDVVISRLNRAGVELV. . ASGDISLQFGDILNLV
Query Conservation   
 

   
 





  .
  
   
  
  
 
      ..      
  

 


 
Alig confidence  .....












.





















..















Template Conservation  .....
 



 
     
   
   

 
      
 
  


  

 
  
  
 
 
Template Sequence  . . . . . EEVPDMYGWTKETAETLAKWLNIELEFQGSGSTVQKQDVRANTAIKDIKKITLT
Template Known Secondary structure  .....
B



TT



SSSSS
TT
BSTT

Template Predicted Secondary structure  .....

























Template SS confidence 


























































   694.....700.........710.........720.........730.........740.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions