Job Description P60872 Confidence 27.29% Date Thu Jan 5 12:07:13 GMT 2012 Rank 32 Aligned Residues 111 % Identity 19% Template c2qndA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:fmr1 protein; PDBTitle: crystal structure of the kh1-kh2 domains from human fragile x mental2 retardation protein Resolution 1.90 Å

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		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	A	I	K	D	V	P	I	L	N	G	D	K	I	I	C	S	R	L	K	R	E	E	T	L	K	V	P	S	P	D	T	I	I	Q	L	G	D	L	L	H	L	V	G	Q	P	A	D	L	H	N	A	Q	L	V	I	G	Q	E	V	D	T	S	L	S	T	K	G	T	D	L	R	V	E	R	V	V	V	T
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	N	I	Q	Q	A	R	K	V	P	G	V	T	A	I	D	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	T	C	T	F	H	I	Y	G	E	D	Q	D	A	V	K	K	A	R	S	F	L	E	F	A	E	D	.	.	.	.	.	.	.	.	.	.	.	V	I	Q	V	P	R
Template Known Secondary structure		G								T	S	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T							S	S																	.	.	.	.	.	.	.	.	.	.	.						G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.												70	.	.	.	.	.
		298			.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.													.
Query SS confidence			.	.													.
Query Sequence		N	.	.	E	N	V	L	G	K	R	I	R	D	L	H	.	F	K	E	R	Y	D	V	V	I	S	R	L	N	R	A	G	V	E	L	V	A	S	G	D	I	S	L	Q	F	G	D	I	L	N	L	V	G	R	P	S	A	I	D	A	V	A	N	V	L
Query Conservation			.	.													.
Alig confidence			.	.													.																										.	.	.	.
Template Conservation																																											.	.	.	.
Template Sequence		N	L	V	G	K	V	I	G	K	N	G	K	L	I	Q	E	I	V	D	K	S	G	V	V	R	V	R	I	E	A	E	N	E	K	N	V	P	Q	E	E	G	.	.	.	.	X	V	P	F	V	F	V	G	T	K	D	S	I	A	N	A	T	V	L	L
Template Known Secondary structure		G	G							G	G	G											T		S									T	T						T	T	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions