Job Description P60872 Confidence 45.06% Date Thu Jan 5 12:07:13 GMT 2012 Rank 27 Aligned Residues 130 % Identity 14% Template c2anrA_ PDB info PDB header:rna-binding protein/rna Chain: A: PDB Molecule:neuro-oncological ventral antigen 1; PDBTitle: crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna2 hairpin Resolution 1.94 Å

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		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	A	I	K	D	V	P	I	L	N	G	D	K	I	I	C	S	R	L	K	R	E	E	T	L	K	V	P	S	P	D	T	I	I	Q	L	G	D	L	L	H	L	V	G	Q	P	A	D	L	H	N	A	Q	L	V	I	G	Q	E	V	D	T	S	L	S	T	K	G	T	D	L	R	V	E	R	V	V	V	T
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.
Template Sequence		G	Q	T	I	V	Q	L	Q	K	E	T	G	A	T	I	K	L	S	K	.	.	.	.	.	.	.	.	.	S	K	D	F	Y	P	G	T	T	E	R	V	C	L	I	Q	G	T	I	E	A	L	N	A	V	H	G	F	I	A	E	K	I	R	E	X	P	Q	N	P	D	R	A	N	Q	V	K	I	I	V	P	N
Template Known Secondary structure		G																			.	.	.	.	.	.	.	.	.	T	T		B		T	T	S	S																									T							G	G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.										.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		298			.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.													.
Query SS confidence			.	.													.
Query Sequence		N	.	.	E	N	V	L	G	K	R	I	R	D	L	H	.	F	K	E	R	Y	D	V	V	I	S	R	L	N	R	A	G	V	E	L	V	A	S	G	D	I	S	L	Q	F	G	D	I	L	N	L	V	G	R	P	S	A	I	D	A	V	A	N	V	L	G	N	A	Q	Q	K	L	Q	Q
Query Conservation			.	.													.
Alig confidence			.	.													.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	A	G	L	I	I	G	K	G	G	A	T	V	K	A	I	X	E	Q	S	G	A	W	V	Q	L	S	Q	K	P	L	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	R	V	V	T	V	S	G	E	P	E	Q	N	R	K	A	V	E	L	I	I	Q	K	I	Q	E	D	P	Q
Template Known Secondary structure										G	G	G										S	S													.	.	.	.	.	.	.	.	.	.	.	.							S	S																	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.													.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions