Job Description P60872 Confidence 30.42% Date Thu Jan 5 12:07:13 GMT 2012 Rank 29 Aligned Residues 129 % Identity 12% Template c1u3bA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains Resolution UNK

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		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.								.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																										.																																					.	.	.	.	.	.	.
Query SS confidence																										.																																					.	.	.	.	.	.	.
Query Sequence		L	I	K	T	I	N	I	R	V	E	N	P	N	L	H	D	L	A	I	K	D	V	P	I	.	L	N	G	D	K	I	I	C	S	R	L	K	R	E	E	T	L	K	V	P	S	P	D	T	I	I	Q	L	G	D	L	L	H	L	V	G	.	.	.	.	.	.	.	Q	P	A	D	L	H	N	A	Q	L	V	I
Query Conservation																										.																																					.	.	.	.	.	.	.
Alig confidence																										.																	.	.	.																		.	.	.	.	.	.	.
Template Conservation																																											.	.	.
Template Sequence		E	F	K	D	V	F	I	E	K	Q	K	G	E	I	L	G	V	V	I	V	E	S	G	W	G	S	I	L	P	T	V	I	I	A	N	M	M	H	G	G	P	.	.	.	A	E	K	S	G	K	L	N	I	G	D	Q	I	M	S	I	N	G	T	S	L	V	G	L	P	L	S	T	C	Q	S	I	I	K	G	L
Template Known Secondary structure												T	T												S	S		S	S		S								S	S	S		.	.	.					S	S			T	T							T	T				T	T	S												T
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	E	V	D	T	S	L	S	T	K	G	T	D	L	R	V	E	R	V	V	V	T	N	E	N	V	L	G	K	R	I	R	D	L	H	F	K	E	R	Y	D	V	V	I	S	R	L	N	R	A	G	V	E	L	V	A	S	G	D	I	S	L	Q	F	G	D	I	L	N
Query Conservation
Alig confidence																																		.	.	.	.	.	.																					.	.	.	.
Template Conservation																																		.	.	.	.	.	.																					.	.	.	.
Template Sequence		K	N	Q	S	R	V	K	L	N	I	V	R	C	P	P	V	T	T	V	L	I	R	R	P	D	L	R	Y	Q	L	G	F	.	.	.	.	.	.	S	V	Q	N	G	I	I	C	S	L	M	R	G	G	I	A	E	R	G	G	.	.	.	.	V	R	V	G	H	R	I	I
Template Known Secondary structure		T	S		S																				S	S	T	T				S		.	.	.	.	.	.				T	T							T	T	S						T	.	.	.	.			T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.																					.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions