Job Description P39829 Confidence 12.19% Date Thu Jan 5 12:00:53 GMT 2012 Rank 64 Aligned Residues 71 % Identity 11% Template c3mu3A_ PDB info PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva Resolution 2.40 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.							.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																								.	.																																		.	.	.	.	.	.
Query SS confidence																								.	.																																		.	.	.	.	.	.
Query Sequence		H	D	T	D	N	V	A	I	I	V	N	D	N	G	L	K	A	G	T	R	F	P	.	.	D	G	L	E	L	I	E	H	I	P	Q	G	H	K	V	A	L	L	D	I	P	A	N	G	E	I	I	R	Y	G	E	V	I	.	.	.	.	.	.	G	Y	A	V	R	A	I	P	R	G	S	W	I	D	E	S	M
Query Conservation																								.	.																																		.	.	.	.	.	.
Alig confidence																								.	.												.																						.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		D	P	Q	Q	D	F	A	F	S	I	D	R	C	S	D	V	T	T	H	T	F	D	I	R	A	A	M	V	L	R	Q	S	I	K	E	.	L	Y	A	K	V	D	L	I	I	N	G	K	T	V	L	S	Y	S	E	T	L	C	G	P	G	L	S	K	L	I	F	C	G	K	K	K	G	E	H	L	Y	Y	E	G
Template Known Secondary structure			T	T								S	S	G	G	G	G	G	S	S											S	S			S	S	.										T	T												S	T	T					T	T	T	T			T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions