Job Description P39829 Confidence 59.66% Date Thu Jan 5 12:00:53 GMT 2012 Rank 4 Aligned Residues 126 % Identity 19% Template c3degC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp Resolution NULL Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.																						410	.	.	.	.	.	.	.	.	.				420	.	.	.	.
Predicted Secondary structure																														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence																														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		G	N	K	K	G	G	L	A	N	V	V	E	K	A	L	G	S	I	A	K	S	G	K	S	A	I	V	E	.	V	L	S	P	G	Q	R	P	T	K	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	Y	A	A	T	P	A	S	D	.	.	.	F	V	C	G	T
Query Conservation																														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence																														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		A	H	I	D	H	G	K	S	T	L	S	D	R	I	I	Q	I	C	G	G	L	S	D	R	E	M	E	A	Q	V	L	D	S	M	D	L	E	R	E	R	G	I	T	I	K	A	Q	S	V	T	L	D	Y	K	A	S	D	G	E	T	Y	Q	L	N	F	I	D	T	P	G	H	V	D	F	S	Y	E	V	S	R
Template Known Secondary structure				S	S	S	S	S	S										S	S			S	S				S	S	S			S	S	S							T	S		S	S											T	T	S														S	T	T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.													.	.	.	.	.	.	450	.	.					.	.	.	.	.		.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.						.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.						.
Query Sequence		Q	Q	V	A	S	G	I	T	V	Q	V	F	T	T	G	R	G	T	P	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	L	M	A	V	P	V	I	.	.	.	.	K	M	A	T	R	.	T	E	L	A	N	R	W	F	D	L	M	D	I	N	A	G	T	I	A	T	G	E	E	T	I	E	E	V	G	W
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.						.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.						.
Template Conservation
Template Sequence		S	L	A	A	C	E	G	A	L	L	V	V	D	A	G	Q	G	V	E	A	Q	T	L	A	N	C	Y	T	A	M	E	M	D	L	E	V	V	P	V	L	N	K	I	D	L	P	A	A	D	P	E	R	V	A	E	E	I	E	D	I	V	G	I	D	A	T	D	A	V	R	C	S	A	K	T	G	V	G	V	Q
Template Known Secondary structure				T	T		S								T	T	T				T												T	T										T	T	S	T	T														T					T	T						T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		488	.	490	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	F	H	F	I	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	L	E	R	L	V	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions