Return to main results Retrieve Phyre Job Id

Job DescriptionP39829
Confidence41.89%DateThu Jan 5 12:00:53 GMT 2012
Rank10Aligned Residues72
% Identity13%Templatec3b8hA_
PDB info PDB header:biosynthetic protein/transferaseChain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   370.........380... ......390.........400......... 410......... 420.........430
Predicted Secondary structure 








...











.............




...
Query SS confidence 













. . .

























. . . . . . . . . . . . .









. . .










Query Sequence  GNKKGGLANVVEKA. . . LGSIAKSGKSAIVEVLSPGQRPTKRG. . . . . . . . . . . . . LIYAATPASD. . . FVCGTQQVASG
Query Conservation 

  









...


  
 

 

  

 
 
     
.............
 





 
... 

 




 
Alig confidence 













...

























.............









...










Template Conservation 



 




 
 

   
 
     
   
  
    
 

 


          








 

  

  

 
 
Template Sequence  AHVDHGKSTLTDSLVQRAGIISAGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTD
Template Known Secondary structure 

GGGTB




B





SS


SS


SSTT
T
S
Template Predicted Secondary structure 

































Template SS confidence 















































































   26...30.........40.........50.........60.........70.........80.........90.........100.....
 
   431........440.
Predicted Secondary structure 





Query SS confidence 










Query Sequence  ITVQVFTTGRG
Query Conservation 
 








Alig confidence 










Template Conservation 







 

Template Sequence  GALVVVDTIEG
Template Known Secondary structure  TTTB
Template Predicted Secondary structure 



Template SS confidence 










   124.....130....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions