Job Description P39829 Confidence 20.98% Date Thu Jan 5 12:00:53 GMT 2012 Rank 38 Aligned Residues 76 % Identity 14% Template c2z64C_ PDB info PDB header:immune system Chain: C: PDB Molecule:lymphocyte antigen 96; PDBTitle: crystal structure of mouse tlr4 and mouse md-2 complex Resolution 2.84 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.																																		.	.	.	.	.	.															.
Query SS confidence																										.	.																																		.	.	.	.	.	.															.
Query Sequence		H	D	T	D	N	V	A	I	I	V	N	D	N	G	L	K	A	G	T	R	F	P	D	G	.	.	L	E	L	I	E	H	I	P	Q	G	H	K	V	A	L	L	D	I	P	A	N	G	E	I	I	R	Y	G	E	V	I	G	Y	.	.	.	.	.	.	A	V	R	A	I	P	R	G	S	W	I	D	E	S	.
Query Conservation																										.	.																																		.	.	.	.	.	.															.
Alig confidence																										.	.											.																							.	.	.	.	.	.															.
Template Conservation																																						.
Template Sequence		H	L	K	F	P	I	S	I	S	S	E	P	C	I	R	L	R	G	T	N	G	F	V	H	V	E	F	I	P	R	G	N	L	K	Y	L	.	Y	F	N	L	F	I	S	V	N	S	I	E	L	P	K	R	K	E	V	L	C	H	G	H	D	D	D	Y	S	F	C	R	A	L	K	G	E	T	V	N	T	S	I
Template Known Secondary structure		S											S				S	S													S	S			T	T		.									T	T													S	S	S		S	S	G	G	G	G			T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	V	L	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	S	F	E	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions