Job Description P0C093 Confidence 99.90% Date Thu Jan 5 11:29:51 GMT 2012 Rank 19 Aligned Residues 185 % Identity 18% Template c3ppbB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr family transcription regulator; PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	R	R	E	E	I	L	Q	S	L	A	L	M	L	E	S	S	D	G	S	Q	R	I	T	T	A	K	L	A	A	S	V	G	V	S	E	A	A	L	Y	R	H	F	P	S	K	T	R	M	F	D	S	L	I	E	F	I	E	D	S	L	I	T	R	I	N	L	I	L	K	D	E	K	D	T	T	A	R	L
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		R	T	K	K	Q	A	I	L	E	T	.	A	L	Q	L	F	V	S	Q	G	F	H	G	T	S	T	A	T	I	A	R	E	A	G	V	A	T	G	T	L	F	H	H	F	P	S	K	E	Q	L	L	E	Q	L	F	L	G	V	K	Q	E	F	A	D	A	I	Q	A	S	V	S	S	R	G	D	L	K	Q	D	A
Template Known Secondary structure												.								T		S	T	T	S										T											S	S																							T					S
Template Predicted Secondary structure												.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	I	V	L	L	L	L	G	F	G	E	R	N	P	G	L	T	R	I	L	T	G	H	A	L	M	F	E	Q	D	R	L	Q	G	R	I	N	Q	L	F	E	R	I	E	A	Q	L	R	Q	V	L	R	E	K	R	M	R	E	G	E	G	Y	T	T	D	E	T	L	L	A	S	Q	I	L	A	F	C	E	G
Query Conservation
Alig confidence																																		.	.																												.
Template Conservation																																		.	.																												.
Template Sequence		E	Q	L	W	F	A	A	L	T	W	A	X	A	N	P	L	K	Q	A	F	F	Q	L	Y	S	X	S	P	T	V	E	Q	.	.	S	V	R	D	Q	A	X	H	G	I	L	G	F	I	A	E	L	I	R	Q	G	Q	A	S	G	E	L	.	A	E	Y	P	I	E	L	X	Q	D	N	C	H	G	Q	Y	L	A
Template Known Secondary structure																										T	T	S	T	T	S			.	.									T	T	T													T	T	S	B	.			S
Template Predicted Secondary structure																																		.	.																												.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	S	R	F	V	R	S	E	F	K	Y	R	P	T	D	D	F	D	A	R	W	P	L	I	A	A	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	R	Y	F	V	D	H	P	E	R	W	Q	Q	A	H	E	R	S	A	S	F	A	L	F	W	N	A	X
Template Known Secondary structure									S	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions