Job Description P0C093 Confidence 99.86% Date Thu Jan 5 11:29:51 GMT 2012 Rank 52 Aligned Residues 183 % Identity 19% Template c3dpjB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:transcription regulator, tetr family; PDBTitle: the crystal structure of a tetr transcription regulator2 from silicibacter pomeroyi dss Resolution 1.90 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	N	R	R	E	E	I	L	Q	S	L	A	L	M	L	E	S	S	D	G	S	Q	R	I	T	T	A	K	L	A	A	S	V	G	V	S	E	A	A	L	Y	R	H	F	P	S	K	T	R	M	F	D	S	L	I	E	F	I	E	D	S	L	I	T	R	I	N	L	I	L	K	D	E	K	D	T	T	A	R
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		Q	A	Q	T	R	D	Q	I	V	A	A	.	A	D	E	L	F	Y	R	Q	G	F	A	Q	T	S	F	V	D	I	S	A	A	V	G	I	S	R	G	N	F	Y	Y	H	F	K	T	K	D	E	I	L	A	E	V	I	R	L	R	L	A	R	T	A	Q	X	L	A	D	W	Q	G	T	G	D	S	P	R	A	R
Template Known Secondary structure		T	T										.										S	T	T											T								T	T		S																										T	T		S	S	S
Template Predicted Secondary structure													.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		L	R	L	I	V	L	L	L	L	G	F	G	E	R	N	P	G	L	.	.	T	R	I	L	T	G	H	A	L	M	F	E	Q	D	R	L	Q	G	R	I	N	Q	L	F	E	R	I	E	A	Q	L	R	Q	V	L	R	E	K	R	M	R	E	G	E	G	Y	T	T	D	E	T	L	L	A	S	Q	I	L	A	F
Query Conservation																				.	.
Alig confidence																				.	.																																							.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		I	A	S	F	I	D	L	X	I	X	N	R	A	K	I	T	R	Y	G	C	P	V	G	S	L	C	T	E	L	S	K	L	D	H	A	A	Q	G	Q	A	N	G	L	F	T	L	F	R	D	W	L	Q	R	Q	F	A	E	A	.	.	.	.	.	.	G	C	T	T	E	A	P	A	L	A	X	H	L	L	A	R
Template Known Secondary structure												T										T	T										T	T		T	T																							.	.	.	.	.	.	S		S	S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	G	M	L	S	R	F	V	R	S	E	F	K	Y	R	P	T	D	D	F	D	A	R	W	P	L	I	A	A	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Q	G	A	A	T	L	A	Q	S	F	H	D	E	G	F	L	R	S	E	V	A	D	X	H	R	W	L	D	N	T	L
Template Known Secondary structure												T	T																T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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