Job Description P0C093 Confidence 99.85% Date Thu Jan 5 11:29:51 GMT 2012 Rank 64 Aligned Residues 179 % Identity 15% Template c3cjdB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of putative tetr transcriptional regulator2 (yp_510936.1) from jannaschia sp. ccs1 at 1.79 a resolution Resolution 1.79 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	R	E	E	I	L	Q	S	L	A	L	M	L	E	S	S	D	G	S	Q	R	I	T	T	A	K	L	A	A	S	V	G	V	S	E	A	A	L	Y	R	H	F	P	S	K	T	R	M	F	D	S	L	I	E	F	I	E	D	S	L	I	T	R	I	N	L	I	L	K	D	E	K	D	T	T	A	R	L	R
Query Conservation
Alig confidence											.																																																						.	.	.	.
Template Conservation											.																																																						.	.	.	.
Template Sequence		A	L	R	E	K	L	I	D	L	.	A	E	A	Q	I	E	A	E	G	L	A	S	L	R	A	R	E	L	A	R	Q	A	D	C	A	V	G	A	I	Y	T	H	F	Q	D	L	N	A	L	T	L	E	V	N	G	R	T	F	A	R	L	G	A	.	.	.	.	A	V	G	A	V	D	H	P	N	E	R	L	I
Template Known Secondary structure											.										G	G	G											T	S									S	S	S																			.	.	.	.
Template Predicted Secondary structure											.																																																						.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	V	L	L	L	L	G	F	G	E	R	N	P	G	L	T	R	I	L	T	G	H	A	L	M	F	E	Q	D	R	L	Q	G	R	I	N	Q	L	F	E	R	I	E	A	Q	L	R	Q	V	L	R	E	K	R	M	R	E	G	E	G	Y	T	T	D	E	T	L	L	A	S	Q	I	L	A	F	C	E	G	M
Query Conservation
Alig confidence																									.																																			.	.	.
Template Conservation																									.																																			.	.	.
Template Sequence		A	X	S	H	A	Y	L	A	F	A	R	E	H	P	K	L	W	R	A	L	F	D	V	.	E	X	R	S	D	G	P	V	P	Q	W	Y	G	H	A	X	A	Q	L	F	S	Y	I	T	T	P	L	A	K	I	F	P	E	S	.	.	.	D	D	A	E	L	D	L	X	T	R	T	L	F	S	S	V	H	G	I
Template Known Secondary structure														S										S	.	S			S	S	S																										T	T		.	.	.
Template Predicted Secondary structure																									.																																			.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	R	F	V	R	S	E	F	K	Y	R	P	T	D	D	F	D	A	R	W	P	L	I	A	A	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	L	G	L	E	N	R	I	S	G	V	P	G	E	Q	L	K	T	X	I	R	L	L	L	E	Q	V
Template Known Secondary structure							T	T		T	T	S			G	G	G										T	T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions