Job Description P0C093 Confidence 99.60% Date Thu Jan 5 11:29:51 GMT 2012 Rank 123 Aligned Residues 179 % Identity 13% Template c2g7gA_ PDB info PDB header:transcription Chain: A: PDB Molecule:rha04620, putative transcriptional regulator; PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1 Resolution 2.01 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	E	E	I	L	Q	S	L	A	L	M	L	E	S	S	D	G	S	Q	R	I	T	T	A	K	L	A	A	S	V	G	V	S	E	A	A	L	Y	R	H	F	P	S	K	T	R	M	F	D	S	L	I	E	F	I	E	D	S	L	I	T	R	I	N	L	I	L	K	D	E	K	D	T	T	A	R	L	R	L
Query Conservation
Alig confidence										.										.	.																																											.	.	.	.
Template Conservation										.										.	.																																											.	.	.	.
Template Sequence		D	R	E	R	I	A	E	A	.	A	L	E	L	V	D	R	D	G	.	.	D	F	R	X	P	D	L	A	R	H	L	N	V	Q	V	S	S	I	Y	H	H	A	K	G	R	A	A	V	V	E	L	V	R	H	R	V	V	R	E	I	D	G	.	.	.	.	S	A	F	E	R	L	P	W	D	E	A	F	S	E
Template Known Secondary structure										.									S	.	.	S										T	T	S							T	T	S																T	T				.	.	.	.	G	G	G	G	T	S
Template Predicted Secondary structure										.										.	.																																											.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.											.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	L	L	L	L	G	F	G	E	R	N	P	G	L	T	R	I	L	T	G	H	A	L	M	F	E	Q	D	R	L	Q	G	R	I	N	Q	L	F	E	R	I	.	.	.	.	.	.	.	.	.	.	E	A	Q	L	R	Q	V	L	R	E	K	R	M	R	E	G	E	G	Y	T	T	D	E	T	L	L	A	S
Query Conservation																																												.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	A	R	S	Y	R	A	A	F	S	R	H	P	T	A	I	R	L	L	A	T	E	T	V	R	D	P	G	S	L	S	V	Y	H	S	A	A	A	G	L	R	G	A	G	F	P	D	D	H	I	X	A	V	I	T	A	A	E	N	F	L	L	G	A	A	L	D	A	A	A	P	E	V	X	I	E	A	D	S	T
Template Known Secondary structure												T		G	G	G						T	S																						T																										S		S								S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	L	A	F	C	E	G	M	L	S	R	F	V	R	S	E	F	K	Y	R	P	T	D	D	F	D	A	R	W	P	L	I	A	A	Q	L	Q
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		T	T	D	D	A	L	T	R	A	L	.	.	A	A	A	P	R	G	P	E	R	A	E	Q	A	F	E	L	G	L	A	A	L	L	A	G	F	H
Template Known Secondary structure			S	S	S							.	.			S			T	T
Template Predicted Secondary structure												.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions