Job Description P0C093 Confidence 99.85% Date Thu Jan 5 11:29:51 GMT 2012 Rank 63 Aligned Residues 185 % Identity 16% Template c2fbqA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of transcriptional regulator pa3006 Resolution 1.80 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		A	K	R	N	R	R	E	E	I	L	Q	S	L	A	L	M	L	E	S	S	D	G	S	Q	R	I	T	T	A	K	L	A	A	S	V	G	V	S	E	A	A	L	Y	R	H	F	P	S	K	T	R	M	F	D	S	L	I	E	F	I	E	D	S	L	I	T	R	I	N	L	I	L	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence														.																																																												.	.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		A	Q	S	E	T	V	E	R	I	L	D	A	.	A	E	Q	L	F	A	E	K	G	F	A	E	T	S	L	R	L	I	T	S	K	A	G	V	N	L	A	A	V	N	Y	H	F	G	S	K	K	A	L	I	Q	A	V	F	S	R	F	L	G	P	F	C	A	S	L	E	K	E	L	D	R	R	Q	A	K	P	E
Template Known Secondary structure														.										S	T	T											T	S									T		S																															T	T
Template Predicted Secondary structure														.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		K	D	E	K	D	T	T	A	R	L	R	L	I	V	L	L	L	L	G	F	G	E	R	N	P	G	L	T	R	I	L	T	G	H	A	L	.	.	.	M	F	E	Q	D	R	L	Q	G	R	I	N	Q	L	F	E	R	I	E	A	Q	L	R	Q	V	L	R	E	K	R	M	R	E	G	E	G	Y	T	T	D	E
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.																														.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.
Template Sequence		A	Q	H	A	T	L	E	D	L	L	H	L	L	V	S	Q	A	M	A	V	K	P	R	S	G	N	D	L	S	I	F	M	R	L	L	G	L	A	F	S	Q	S	Q	G	H	L	R	K	Y	L	E	E	V	Y	G	K	V	F	R	R	Y	M	L	L	V	N	E	A	.	.	.	.	.	.	A	P	K	L	P	P
Template Known Secondary structure																					S			S	S	S																T	T																											.	.	.	.	.	.	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.												.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	L	A	S	Q	I	L	A	F	C	E	G	M	L	S	R	F	V	.	.	.	.	.	.	.	.	.	.	.	R	S	E	F	K	Y	R	P	T	D	D	F	D	A	R	W	P	L	I	A	A	Q	L	Q
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	L	F	W	R	V	H	F	M	L	G	A	A	A	F	S	M	S	G	I	K	A	L	R	A	M	A	E	T	D	F	G	V	N	T	S	T	E	Q	V	M	H	L	M	V	P	F	F	A	A	G	M	R
Template Known Secondary structure																					T													S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions