Job Description P0C093 Confidence 99.80% Date Thu Jan 5 11:29:51 GMT 2012 Rank 92 Aligned Residues 191 % Identity 16% Template c1t33B_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family); PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2 Resolution 2.20 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		T	A	K	R	N	R	R	E	E	I	L	Q	S	L	A	L	M	L	E	S	S	D	G	S	Q	R	I	T	T	A	K	L	A	A	S	V	G	V	S	E	A	A	L	Y	R	H	F	P	S	K	T	R	M	F	D	S	L	I	E	F	I	E	D	S	L	I	T	R	I	N	L	I	L	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence															.													.																																															.	.	.	.	.	.	.
Template Conservation															.													.
Template Sequence		T	K	G	E	Q	A	K	S	Q	L	I	A	A	.	A	L	A	Q	F	G	E	Y	G	L	H	A	.	T	T	R	D	I	A	A	L	A	G	Q	N	I	A	A	I	T	Y	Y	F	G	S	K	E	D	L	Y	L	A	C	A	Q	W	I	A	D	F	L	G	E	K	F	R	P	H	A	E	K	A	E	R	L	F
Template Known Secondary structure															.									G	G	G	S	.										T	S		T							T		S																															T
Template Predicted Secondary structure															.													.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
					79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.																											.	.
Query SS confidence		.	.	.																											.	.
Query Sequence		.	.	.	K	D	E	K	D	T	T	A	R	L	R	L	I	V	L	L	L	L	G	F	G	E	R	N	P	G	.	.	L	T	R	I	L	T	G	H	A	L	M	F	E	Q	D	R	L	Q	G	R	I	N	Q	L	F	E	R	I	E	A	Q	L	R	Q	V	L	R	E	K	R	M	R	E	G	E	G	Y	T	T
Query Conservation		.	.	.																											.	.
Alig confidence		.	.	.																											.	.
Template Conservation
Template Sequence		S	Q	P	A	P	D	R	D	A	I	R	E	L	I	L	L	A	C	K	N	M	I	M	L	L	T	Q	E	D	T	V	N	L	S	K	F	I	S	R	E	Q	L	S	P	T	S	A	Y	Q	L	V	H	E	Q	V	I	D	P	L	H	T	H	L	T	R	L	V	A	A	Y	T	G	C	D	A	N	D	T	R	M
Template Known Secondary structure		T	S	S	S																					T	T		G	G	G													S												T																	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		154	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		D	E	T	L	L	A	S	.	.	Q	I	L	A	F	C	E	G	M	L	S	R	F	V	R	S	E	F	K	Y	R	P	T	D	D	F	D	A	R	W	P	L	I	A	A	Q	L	Q
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		I	L	H	T	H	A	L	L	G	E	V	L	A	F	R	L	G	K	E	T	I	L	L	R	T	G	W	P	Q	F	D	E	E	K	A	E	L	I	Y	Q	T	V	T	C	H	I	D
Template Known Secondary structure																		T									T		S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions