Job Description P0C093 Confidence 99.91% Date Thu Jan 5 11:29:51 GMT 2012 Rank 15 Aligned Residues 195 % Identity 13% Template c1rktA_ PDB info PDB header:transcription Chain: A: PDB Molecule:protein yfir; PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		A	E	K	.	.	Q	T	A	K	R	N	R	R	E	E	I	L	Q	S	L	A	L	M	L	E	S	S	D	G	S	Q	R	I	T	T	A	K	L	A	A	S	V	G	V	S	E	A	A	L	Y	R	H	F	P	S	K	T	R	M	F	D	S	L	I	E	F	I	E	D	S	L	I	T	R	I	N	L	I	L	K
Query Conservation					.	.
Alig confidence					.	.															.
Template Conservation																					.
Template Sequence		S	P	K	V	T	K	E	H	K	D	K	R	Q	A	E	I	L	E	A	.	A	K	T	V	F	K	R	K	G	F	E	L	T	T	X	K	D	V	V	E	E	S	G	F	S	R	G	G	V	Y	L	Y	F	S	S	T	E	E	X	F	R	R	I	I	E	T	G	L	D	E	G	L	R	K	L	D	K	S	A	E
Template Known Secondary structure				T	T																.										S	T	T											T	S							T	T		S																									T	T
Template Predicted Secondary structure																					.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		D	E	K	D	T	T	A	R	L	R	L	I	V	L	L	L	L	G	F	G	E	R	N	P	G	.	.	L	T	R	I	L	T	G	H	A	L	M	F	E	Q	D	R	L	Q	G	R	I	N	Q	L	F	E	R	I	E	A	Q	L	R	Q	V	L	R	E	K	R	M	R	E	G	E	G	Y	T	T	D	E	T	L
Query Conservation																											.	.
Alig confidence		.																									.	.
Template Conservation		.
Template Sequence		.	H	Q	S	V	W	A	S	I	S	S	Y	L	D	E	L	T	E	G	L	R	D	V	A	D	T	L	A	P	V	Q	F	E	Y	L	V	T	A	W	R	N	E	E	R	R	Q	Y	L	E	K	R	Y	D	L	F	V	E	R	F	S	R	L	L	Q	K	G	I	D	Q	G	E	F	Q	P	V	Q	P	L	A	T
Template Known Secondary structure		.	T	S																	T	T	T	G	G	G	S	S										G	G	G	G																													T	T					S	S
Template Predicted Secondary structure		.
Template SS confidence
			81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		L	A	S	Q	I	L	A	F	C	E	G	M	L	S	R	F	V	R	S	E	F	K	Y	.	R	P	T	D	D	F	D	A	R	W	P	L	I	A	A	Q	L	Q
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		I	A	K	F	F	L	N	X	N	D	G	I	I	Q	N	A	L	Y	F	D	E	E	K	A	D	V	S	G	L	A	E	S	A	K	L	Y	L	K	T	V	L	Q
Template Known Secondary structure																				S																							T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions