Job Description P17117 Confidence 100.00% Date Thu Jan 5 11:36:00 GMT 2012 Rank 36 Aligned Residues 174 % Identity 16% Template c2h0uA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-flavin oxidoreductase; PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																	.																																																								.	.	.	.	.	.	.	.	.
Query SS confidence																	.																																																								.	.	.	.	.	.	.	.	.
Query Sequence		P	T	I	E	L	I	C	G	H	R	S	I	R	H	F	.	T	D	E	P	I	S	E	A	Q	R	E	A	I	I	N	S	A	R	A	T	S	S	S	S	F	L	Q	C	S	S	I	I	R	I	T	D	K	A	L	R	E	E	L	V	T	L	T	G	G	Q	K	H	V	A	Q	.	.	.	.	.	.	.	.	.
Query Conservation																	.																																																								.	.	.	.	.	.	.	.	.
Alig confidence																	.																																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	V	V	A	L	Q	H	Q	R	F	A	A	K	K	Y	D	P	N	R	R	I	S	Q	K	D	W	E	A	L	V	E	V	G	R	L	A	P	S	S	I	G	L	E	P	W	K	X	L	L	L	K	N	A	S	H	F	V	I	Y	L	A	R	K	G	V	T	Y	D	S	D	Y	V	K	K	V	X	H	E	V	K
Template Known Secondary structure												B				B		T	T																	T				G	G	G																						S				T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
				73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.	.																																																																										.	.	.	.	.
Query SS confidence		.	.																																																																										.	.	.	.	.
Query Sequence		.	.	A	A	E	F	W	V	F	C	A	D	F	N	R	H	L	Q	I	C	P	D	A	Q	L	G	L	A	E	Q	L	L	L	G	V	V	D	T	A	M	M	A	Q	N	A	L	I	A	A	E	S	L	G	L	G	G	V	Y	I	G	G	L	R	N	N	I	E	A	V	T	K	L	L	K	L	.	.	.	.	.
Query Conservation		.	.																																																																										.	.	.	.	.
Alig confidence		.	.																																																													.	.												.	.	.	.	.
Template Conservation																																																																.	.
Template Sequence		K	R	D	Y	D	T	N	S	R	F	A	Q	I	I	K	N	F	Q	E	N	D	X	K	L	N	S	E	R	S	L	F	D	W	A	S	K	Q	T	Y	I	Q	X	A	N	X	X	X	A	A	A	X	L	G	I	D	S	C	P	I	E	G	Y	.	.	D	Q	E	K	V	E	A	Y	L	E	E	K	G	Y	L	N
Template Known Secondary structure							T	T	S												T	T	S				S																										T	T									S	.	.													T	S
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	H	V	L	P	L	F	G	L	C	L	G	W	P	A	D	N	P	D	L	K	P	R	L	P	A	S	I	L	V	H	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	E	F	G	V	S	V	X	A	C	F	G	Y	R	N	Q	E	I	T	P	K	T	R	W	K	T	E	V	I	Y	E	V
Template Known Secondary structure		T	T	T												B	S	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions