Job Description P0A8I1 Confidence 98.07% Date Thu Jan 5 11:07:53 GMT 2012 Rank 7 Aligned Residues 91 % Identity 16% Template c3psfA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) Resolution 2.59 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.					.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure										.	.	.	.	.																										.	.	.	.
Query SS confidence										.	.	.	.	.																										.	.	.	.
Query Sequence		T	L	L	A	F	D	F	G	.	.	.	.	.	T	K	S	I	G	V	A	V	G	Q	R	I	T	G	T	A	R	P	L	P	A	I	K	A	Q	.	.	.	.	D	G	T	P	D	W	N	I	I	E	R	L	L	K	E	W	Q	P	D	E	I	I	V	G	L	P	L	N	M	D	G	T	E	Q	P	L	T	A
Query Conservation										.	.	.	.	.																										.	.	.	.
Alig confidence										.	.	.	.	.																										.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.
Template Sequence		K	I	L	S	L	T	C	G	Q	G	R	F	G	A	D	A	I	I	A	V	Y	V	N	R	K	G	D	F	I	R	D	Y	K	I	V	D	N	P	F	D	K	T	N	P	E	K	F	E	D	T	L	D	N	I	I	Q	S	C	Q	P	N	A	I	G	I	N	.	.	.	.	.	.	.	G	P	N	P	K	T	Q
Template Known Secondary structure									T	T			T	T	T	S									T	T	S										S		T	T		S	S																			S						.	.	.	.	.	.	.		S	S	T
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Template SS confidence
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.								.	.	.	.	.	820	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.									.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.
Query Sequence		R	A	R	K	F	A	N	R	I	H	G	R	F	G	.	.	.	.	.	.	.	.	V	E	V	K	L	H	D	E	R	L	S	T	V
Query Conservation																.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	Y	K	R	L	Q	E	V	L	H	K	K	Q	I	V	D	S	R	G	H	T	I	P	I	I	Y	V	E	D	E	V	A	I	R
Template Known Secondary structure														T	T		B		T	T	S		B									T	T
Template Predicted Secondary structure
Template SS confidence
		822	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions