Job Description P0A8I1 Confidence 35.99% Date Thu Jan 5 11:07:53 GMT 2012 Rank 118 Aligned Residues 124 % Identity 8% Template c3mcaB_ PDB info PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay Resolution 2.74 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.															.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	A	F	D	F	G	T	K	S	I	G	V	A	V	G	Q	R	I	T	G	T	A	R	P	L	P	A	I	K	A	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	P	D	W	N	I	I	E	R	L	L	K	E	W	Q	P	D	E	I	I	V	G	L	P	L	N	M	D	G	T	E	Q
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.
Template Sequence		A	V	V	L	D	E	G	L	A	N	I	C	L	I	T	D	Y	M	T	I	L	R	Q	R	I	D	Q	V	I	P	R	K	R	R	G	D	S	S	A	Y	Q	K	G	L	D	K	F	Y	D	S	V	F	Q	S	I	N	S	E	F	D	F	D	K	L	K	V	V	I	L	A	.	.	.	.	.	.	.	S	P	G
Template Known Secondary structure							T	T									S	S																B	T	T	B																									T	T	T		S						.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.								.	210	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90									.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.
Query Sequence		P	L	T	A	R	A	R	K	F	A	N	R	I	H	G	R	F	G	V	E	.	.	.	.	.	.	.	.	V	K	L	H	D	E	R	L	S	T	V	E	A	R	S	G	L	F	E	Q	G	G	Y	R	A	L	N	K	G	K	V	D	S	A	S	A	V	I	I	L	E	S	Y	F	E	Q
Query Conservation																						.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.																															.
Template Conservation																																																												.
Template Sequence		F	V	A	R	G	L	Y	D	Y	I	F	S	M	A	V	K	L	D	L	K	Q	I	V	K	S	K	N	K	F	V	I	L	H	S	S	T	G	H	I	H	S	L	N	E	I	L	K	D	P	A	V	E	S	K	L	A	D	T	.	K	Y	V	Q	E	I	R	V	L	N	K	F	Y	D	V
Template Known Secondary structure		S																T	T								G	G	G							S		S	S	G	G	G	G	G	T	S	S	S									T	T	S	.
Template Predicted Secondary structure																																																												.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions