Job Description P39383 Confidence 72.51% Date Thu Jan 5 12:00:15 GMT 2012 Rank 158 Aligned Residues 237 % Identity 17% Template c3t69A_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase; PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti Resolution 2.55 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.	40	.	.	.	.	.	.	.																	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.														.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.														.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	I	G	I	D	S	G	S	T	A	T	K	G	I	L	L	A	.	D	G	V	I	T	R	R	F	L	V	P	T	P	.	.	.	.	.	.	F	R	P	A	T	A	I	T	E	A	W	E	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	G	L	E	T	T	P	F	L	T	L
Query Conservation																				.														.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.														.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Y	A	A	V	D	W	G	T	S	S	F	R	L	W	I	I	G	E	D	G	A	V	L	A	E	R	R	S	A	E	G	M	T	T	A	A	K	T	G	F	H	T	I	L	D	G	H	L	A	A	V	S	A	P	A	H	L	P	I	I	I	C	G	M	A	G	A	R	Q	G	W	K	E	A	G	Y	I	E	T
Template Known Secondary structure										S	S									T	T	S									S																						T	T			T	T								G	G	G	S	T	T	S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.																								.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	Y	G	R	Q	L	V	D	F	A	D	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	E	I	S	C	H	G	L	G	A	R	F	L	A	P	A	T	R	A	V	I	D	I	G	G	Q	D	S	K	V	I	Q	L	D	D	D	G	N	L	C	D	F
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																																																																									.
Template Sequence		P	A	A	L	A	E	I	A	G	R	A	T	A	I	P	D	V	D	R	D	I	R	I	L	P	G	L	A	Q	R	D	R	R	H	P	D	V	M	R	G	E	E	T	Q	L	L	G	A	A	A	H	L	G	A	G	S	H	L	V	C	M	P	G	T	H	S	K	W	V	R	L	.	A	D	D	R	V	E	G	F
Template Known Secondary structure		S			T	T					T					S	S	S	S	S													T	T	S					S	S										T	T	S		S	S								S	S	S							.		T	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.													.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	M	N	D	K	C	A	A	G	T	G	R	F	L	E	V	I	S	R	T	L	.	.	.	.	.	.	.	.	.	.	.	.	G	T	S	V	E	Q	L	D	S	I	T	E	N	V	T	P	H	A	I	T	S	M	C	T	V	F	A	E	S	E	A	I	S	L	R	S	A	G	V	A	P	E	A	I	L	A	G
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation		.	.	.	.	.																																																								.	.
Template Sequence		.	.	.	.	.	S	T	F	M	T	G	E	L	F	D	T	I	A	R	H	T	I	L	S	H	A	V	A	E	A	D	T	F	A	A	G	S	A	A	F	T	D	A	V	S	R	T	R	E	N	P	A	L	A	T	N	L	L	F	S	.	.	V	R	A	G	Q	L	L	H	G	T	A	A	A	D	A	R	A	Q
Template Known Secondary structure		.	.	.	.	.																S	T	T					T	T		S				T	T	S														G	G	G								.	.
Template Predicted Secondary structure		.	.	.	.	.																																																								.	.
Template SS confidence
							167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		V	I	N	A	M	A	R	R	.	S	A	N	F	I	A	R	L	S	C	E	A	P	I	L	F	T	G	G	V	S	H	C	Q	K	F	A	R	M	L	E	S	H	L	R	M	P	V	N	T	H	P	D	A	Q	F	A	G	A	I	G	A	A	V	I	G	Q
Query Conservation										.
Alig confidence										.																															.											.
Template Conservation																																									.											.
Template Sequence		L	S	G	T	L	I	G	L	E	I	A	G	A	L	A	G	S	G	S	V	D	G	V	C	L	V	G	S	G	G	L	G	T	L	Y	R	T	A	L	.	E	S	Q	G	L	N	V	R	A	V	.	D	A	D	E	A	V	R	A	G	L	S	A	A	A	R
Template Known Secondary structure																T	T		S	S																					.			T	T							.
Template Predicted Secondary structure																																									.											.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions