Job Description P39383 Confidence 99.88% Date Thu Jan 5 12:00:15 GMT 2012 Rank 8 Aligned Residues 236 % Identity 17% Template c3smpA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 1; PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																																																		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	I	D	S	G	S	T	A	T	K	G	I	L	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	V	I	T	R	R	F	L	V	P	T	P	F	R
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																																																																.	.
Template Sequence		F	G	M	D	I	G	G	T	L	V	K	L	V	Y	F	E	P	K	D	I	T	A	E	E	E	Q	E	E	V	E	N	L	K	S	I	R	K	Y	L	T	S	N	T	A	Y	G	K	T	G	I	R	D	V	H	L	E	L	K	N	L	T	M	C	G	R	K	G	N	L	H	F	I	R	F	P	S	C	A	.	.
Template Known Secondary structure								S	S										S										S															S			T	T	T					G	G	G								T	T												G	G	G	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.									.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																								.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																								.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	T	A	I	T	E	A	W	E	T	L	R	E	G	.	.	L	E	T	T	P	F	L	T	L	T	G	Y	G	R	Q	L	V	D	F	A	D	K	Q	.	.	.	.	.	.	.	.	V	T	E	I	S	C	H	G	L	G	A	R	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.																								.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.												.	.																								.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	M	H	R	F	I	Q	M	G	S	E	K	N	F	S	S	L	H	T	T	L	C	A	T	G	G	G	A	F	K	F	E	E	D	F	R	M	I	A	D	L	Q	L	H	K	L	D	E	L	D	C	L	I	Q	G	L	L	Y	V	D	S	V	G	F	N	G	K	P	E	C	Y	Y	F	E	N	P	T
Template Known Secondary structure		.	.	.	.											T	T	G	G	G	T		S						S	T	T																																					B	T	T	B		S						S	T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
											88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																					.														.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																					.														.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	A	P	A	T	R	A	V	I	D	I	G	G	Q	D	S	K	V	I	Q	L	D	D	D	G	N	L	C	D	F	L	M	N	D	K	C	A	A	G	T	G	R	F	L	E	V	I	S	R	T	L	G	T	.	S	V	E	Q	L	D	S	I	T	E	N	V	T	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.																																																					.														.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																														.	.	.																					.														.	.	.	.	.
Template Conservation																																								.	.	.
Template Sequence		N	P	E	L	C	Q	K	K	P	Y	C	P	Y	P	M	L	L	V	N	M	G	S	G	V	S	I	L	A	V	Y	S	K	D	N	Y	K	R	V	.	.	.	T	G	T	S	L	G	G	G	T	F	L	G	L	C	C	L	L	T	G	C	E	T	F	E	E	A	L	E	M	A	A	K	G	D	S	T	N	V	D
Template Known Secondary structure			T	T	T										S							S	S	S									T	T						.	.	.				S		S																S													G	G	G	T	S
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
																153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.															.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.															.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	A	I	T	S	M	C	T	V	F	A	E	S	E	A	I	S	L	R	S	A	G	V	A	P	E	A	I	L	A	G	V	I	N	A	M	A	R	R	S	A	N	F	I	.	.	.	A	R	L	S	C	E	A	P	I	L	F	T	G	G	.	V	S	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.																							.	.	.															.
Template Conservation																																						.
Template Sequence		K	L	V	K	D	I	Y	G	G	D	Y	E	R	F	G	L	Q	G	S	A	V	A	S	S	F	G	N	M	M	S	K	E	K	R	D	S	.	I	S	K	E	D	L	A	R	A	T	L	V	T	I	T	N	N	I	G	S	I	A	R	M	C	A	L	N	E	N	I	D	R	V	V	F	V	G	N	F	L	R	I
Template Known Secondary structure									S	S		B	G	G	G	T	B		T	T	S				T	T	G	G	G	G	S							.																														T								S	G	G	G	T	S
Template Predicted Secondary structure																																						.
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.		.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
		215	.	.	.	.	220	.	.	.				.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure											.	.	.				.	.	.
Query SS confidence											.	.	.				.	.	.
Query Sequence		C	Q	K	F	A	R	M	L	E	.	.	.	S	H	L	.	.	.	R	M	P	V	N	T	H	P	D	A	Q	F	A	G	A	I	G	A	A	V	I	G	Q	R
Query Conservation											.	.	.				.	.	.
Alig confidence											.	.	.				.	.	.
Template Conservation
Template Sequence		N	M	V	S	M	K	L	L	A	Y	A	M	D	F	W	S	K	G	Q	L	K	A	L	F	L	E	H	E	G	Y	F	G	A	V	G	A	L	L	E	L	F	K
Template Known Secondary structure			T														T	T	T	S				B			T	T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions